Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABXS88_RS11460 Genome accession   NZ_AP031572
Coordinates   2509946..2510314 (+) Length   122 a.a.
NCBI ID   WP_353672180.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2504946..2515314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS11440 (OLK001_22440) rppA 2505474..2506166 (-) 693 WP_353672177.1 two-component system response regulator RppA -
  ABXS88_RS11445 (OLK001_22450) - 2506179..2506562 (+) 384 WP_353672178.1 hypothetical protein -
  ABXS88_RS11450 (OLK001_22460) - 2506638..2508329 (+) 1692 WP_353672179.1 NAD-binding protein -
  ABXS88_RS11455 (OLK001_22470) - 2508795..2509946 (+) 1152 WP_353674812.1 response regulator -
  ABXS88_RS11460 (OLK001_22480) pilH 2509946..2510314 (+) 369 WP_353672180.1 response regulator Machinery gene
  ABXS88_RS11465 (OLK001_22490) - 2510376..2510843 (+) 468 WP_353672181.1 chemotaxis protein CheW -
  ABXS88_RS11470 (OLK001_22500) - 2510859..2513828 (+) 2970 WP_353672182.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13655.80 Da        Isoelectric Point: 4.5155

>NTDB_id=98195 ABXS88_RS11460 WP_353672180.1 2509946..2510314(+) (pilH) [Synechocystis sp. LKSZ1]
MKRILVVEDSKSEQLLISGLLKTLGAEIIALSDGNSAIQWLTDNPAPDLIFLDIVMPDISGYDLCRKIRTDLGLETVPIV
FCSTKNEEYDRFWALRQGGNAYLTKPYSPSDLMKTAKEYLAI

Nucleotide


Download         Length: 369 bp        

>NTDB_id=98195 ABXS88_RS11460 WP_353672180.1 2509946..2510314(+) (pilH) [Synechocystis sp. LKSZ1]
ATGAAACGTATTTTAGTTGTCGAAGATTCTAAATCAGAGCAATTATTAATCTCTGGTCTATTAAAAACTTTGGGTGCTGA
AATTATCGCCCTGAGCGATGGCAATTCTGCCATTCAATGGCTGACGGATAATCCAGCGCCGGATTTGATTTTTTTAGATA
TTGTTATGCCAGATATCAGTGGCTATGATCTCTGTCGTAAAATTCGTACAGACCTTGGTTTGGAGACGGTTCCTATTGTT
TTTTGCTCCACAAAAAATGAAGAATACGACCGCTTTTGGGCCCTCCGTCAAGGGGGTAATGCCTATCTAACCAAGCCCTA
CAGTCCCAGTGACTTGATGAAAACAGCTAAGGAATATTTAGCTATTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

46.667

98.361

0.459

Multiple sequence alignment