Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NST83_RS22240 Genome accession   NZ_CP151951
Coordinates   4813493..4814866 (-) Length   457 a.a.
NCBI ID   WP_137060437.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2782     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4808493..4819866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST83_RS22215 (NST83_22215) ispF 4809069..4809560 (-) 492 WP_342415681.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NST83_RS22220 (NST83_22220) ispD 4809557..4810255 (-) 699 WP_342415682.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NST83_RS22225 (NST83_22225) - 4810326..4811411 (-) 1086 WP_342415683.1 PIN/TRAM domain-containing protein -
  NST83_RS22230 (NST83_22230) pssA 4811603..4812349 (-) 747 WP_137060435.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NST83_RS22235 (NST83_22235) disA 4812404..4813480 (-) 1077 WP_137060436.1 DNA integrity scanning diadenylate cyclase DisA -
  NST83_RS22240 (NST83_22240) radA 4813493..4814866 (-) 1374 WP_137060437.1 DNA repair protein RadA Machinery gene
  NST83_RS22245 (NST83_22245) clpC 4815168..4817612 (-) 2445 WP_137060438.1 ATP-dependent protease ATP-binding subunit ClpC -
  NST83_RS22250 (NST83_22250) - 4817657..4818721 (-) 1065 WP_137060439.1 protein arginine kinase -
  NST83_RS22255 (NST83_22255) - 4818751..4819275 (-) 525 WP_342415684.1 UvrB/UvrC motif-containing protein -
  NST83_RS22260 (NST83_22260) - 4819339..4819803 (-) 465 WP_137060441.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49285.93 Da        Isoelectric Point: 6.7621

>NTDB_id=981885 NST83_RS22240 WP_137060437.1 4813493..4814866(-) (radA) [Paenibacillus sp. FSL R10-2782]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKEARILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLRVLYVSGEESVRQTKLRADRLGALSPNLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIATTHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIVGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=981885 NST83_RS22240 WP_137060437.1 4813493..4814866(-) (radA) [Paenibacillus sp. FSL R10-2782]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACAGAGTGCGGTTATGAATCGCCCAAATGGTATGGAAAATGTCCCGGATG
CCAGGCATGGAATTCCATGGTGGAGGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGTTCTTCCCTTCTTACTCATA
GCACAAAAGATAAGCCACTCCCTATTATTGAGGTGGAGAGTGGCAAAGAAGCACGAATTTTGACGGGAATTGGCGAATTG
AATCGCGTGCTCGGGGGAGGCGTGGTGCCGGGTTCACTGGTTCTGGTGGGCGGTGATCCAGGGATTGGGAAATCTACGCT
TATGCTACAGACATCGAATGAGCTGGCCTTAACCGGTCTGAGGGTGCTGTATGTGTCAGGTGAGGAATCGGTCCGCCAGA
CGAAGCTGCGTGCAGACCGCCTTGGTGCCTTGTCCCCCAACCTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTGGACAGCCTGAAACCGGAGTTTCTGGTGATTGATTCTATCCAGACCGTATATTTGCCTGAGGTGACGAGTGC
GCCGGGGAGTGTAGCACAGGTGCGGGAATGTACTTCACGTTTTATGCGGATTGCCAAGGGACTAGGTATTGCAACGGTGC
TGGTAGGACATGTGACCAAGGAAGGGGCCATTGCAGGCCCGCGTCTGTTGGAACATATGGTCGATTGCGTGCTTTATTTT
GAAGGAGAGCGTCATCATACGTATCGGCTATTGCGTGCAGTTAAGAACCGCTTTGGTTCTACGAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGCTTGCGTGAGGTGTCGAATCCTTCGGAGCTGTTTCTGTCCGAACGACCGCTGGGGGTGGCTG
GTTCGACTGTCGTTGCCAGTATGGAAGGAACCCGACCTGTATTGGTTGAGCTGCAAGCGCTGATTGCGACCACGCATTTT
CCTTCTCCACGCCGAATGGGTACAGGGGTTGACCATCATCGAATGGGATTGATTATAGCCGTGTTGGAAAAGCGGATGGG
CATGTTTTTGCAAAATCAGGATGCGTATCTAAATGTAGCTGGAGGCGTAAAACTGGATGAACCAGCGGTGGACCTGGCAA
TAGCGGTGAGTATTGCTTCCAGTTTTCGAGATGCGCCTACCAAGCCGTATGATGTGATTTTTGGCGAGGTAGGGCTGACG
GGGGAGGTGCGTGCTGTATCCAGAGCGGAGCAGCGTGTGCGGGAAGCAGAGAAGCTGGGTTTTAAACGGGTGATTATGCC
GGAAAAGAGCCTGAAGGGCTGGACGCATCCGAAAGGGATACAGATTGTAGGAGTAGGAACGGTGGCAGATGCATTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(72-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.594

100

0.667
  radA Streptococcus pneumoniae Rx1

58.628

98.906

0.58
  radA Streptococcus pneumoniae D39

58.628

98.906

0.58
  radA Streptococcus pneumoniae R6

58.628

98.906

0.58
  radA Streptococcus pneumoniae TIGR4

58.628

98.906

0.58
  radA Streptococcus mitis NCTC 12261

58.628

98.906

0.58
  radA Streptococcus mitis SK321

58.407

98.906

0.578

Multiple sequence alignment