Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NST83_RS21330 Genome accession   NZ_CP151951
Coordinates   4654682..4655635 (-) Length   317 a.a.
NCBI ID   WP_342415595.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2782     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4649682..4660635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST83_RS21305 (NST83_21305) - 4650337..4650663 (-) 327 WP_044644532.1 thioredoxin family protein -
  NST83_RS21310 (NST83_21310) - 4650871..4651782 (-) 912 WP_342415591.1 aldo/keto reductase -
  NST83_RS21315 (NST83_21315) - 4651994..4652977 (-) 984 WP_342415592.1 siderophore ABC transporter substrate-binding protein -
  NST83_RS21320 (NST83_21320) - 4652990..4653748 (-) 759 WP_342415593.1 ATP-binding cassette domain-containing protein -
  NST83_RS21325 (NST83_21325) - 4653742..4654692 (-) 951 WP_342415594.1 iron chelate uptake ABC transporter family permease subunit -
  NST83_RS21330 (NST83_21330) ceuB 4654682..4655635 (-) 954 WP_342415595.1 ABC transporter permease Machinery gene
  NST83_RS21335 (NST83_21335) - 4656205..4656882 (+) 678 WP_137060350.1 response regulator transcription factor -
  NST83_RS21340 (NST83_21340) - 4656883..4657800 (+) 918 WP_342415596.1 HAMP domain-containing sensor histidine kinase -
  NST83_RS21345 (NST83_21345) - 4657911..4658588 (+) 678 WP_342415597.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34731.69 Da        Isoelectric Point: 9.7902

>NTDB_id=981883 NST83_RS21330 WP_342415595.1 4654682..4655635(-) (ceuB) [Paenibacillus sp. FSL R10-2782]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTDDQAQVLLISRLPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALAGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QSISSWMQGDFSLVMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTATLGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=981883 NST83_RS21330 WP_342415595.1 4654682..4655635(-) (ceuB) [Paenibacillus sp. FSL R10-2782]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATCGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCGACGATCAGGCGCAGGTACTCCTGATTAGCAGACTCCCCCGTTTGATCAGCATCATCA
TCGCAGGAGCGAGTATGAGTATCTGTGGGCTTATTATGCAGCAGCTTACCCGGAACCGATTTGTATCGCCCACCACCGCA
GGGACGATGGACGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCTGGATTTTGGACGAAGATGCT
GACCGCTTTCGGGTTTGCTCTGGCGGGGACACTAATTTTCATGAAAATACTGGACAAAATCCGGTTCAAGGACCCGGTAT
TTATCCCGCTGGTCGGTTTGATGTTCGGGGGCATTTTGAATTCGGTGACAACCTTTTTCGCCTATAAATACAATCTGATC
CAGAGCATTTCCAGTTGGATGCAGGGTGATTTTTCACTGGTGATGAGTGGTCGCTATGAGATGCTGTATCTTAGTGTTCC
TTTGGTTGCATTGGCATACATATATGCGAATCGTTTCACAATTGCAGGCATGGGCGAGGATTTTGCGGCAAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTCGGTCTGGTGATCGTGGCTTTGGTTTCCTCCGTAGTCATATTGACCGTGGGAACG
ATCCCTTTCCTGGGGCTGGTTGTACCGAATCTGGTTAGCATGTATATGGGCGATAATCTAAAAAAAAGTTTGGCCCACAC
CGCGACCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTCATCATTTATCCGTATGAAATATCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGTTGAGGAGAAGGGCCTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.429

99.369

0.511

Multiple sequence alignment