Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NST83_RS16620 Genome accession   NZ_CP151951
Coordinates   3675385..3675756 (-) Length   123 a.a.
NCBI ID   WP_342417975.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2782     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3670385..3680756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST83_RS16600 (NST83_16600) - 3671374..3672264 (-) 891 WP_342414961.1 hypothetical protein -
  NST83_RS16605 (NST83_16605) - 3672542..3673429 (-) 888 WP_342414962.1 DMT family transporter -
  NST83_RS16610 (NST83_16610) - 3673619..3674368 (+) 750 WP_342414963.1 YdcF family protein -
  NST83_RS16615 (NST83_16615) - 3674541..3675011 (-) 471 WP_342414964.1 DUF523 domain-containing protein -
  NST83_RS16620 (NST83_16620) nucA/comI 3675385..3675756 (-) 372 WP_342417975.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NST83_RS16625 (NST83_16625) sigK 3676008..3676709 (+) 702 WP_014282571.1 RNA polymerase sporulation sigma factor SigK -
  NST83_RS16630 (NST83_16630) - 3676876..3677850 (-) 975 WP_342414965.1 alpha/beta hydrolase -
  NST83_RS16635 (NST83_16635) - 3677847..3678476 (-) 630 WP_342414966.1 TetR/AcrR family transcriptional regulator -
  NST83_RS16640 (NST83_16640) - 3679326..3679835 (+) 510 WP_342414967.1 discoidin domain-containing protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13561.94 Da        Isoelectric Point: 5.1881

>NTDB_id=981876 NST83_RS16620 WP_342417975.1 3675385..3675756(-) (nucA/comI) [Paenibacillus sp. FSL R10-2782]
MQSAYAEPVVNMQRAAAEYTLNFPTSRYPETGAHIKDAIATGHSSVCTIDRDGAEENRRESLKGYPTKKGYDRDEWPMAM
CAEGGAGADIRYISPSDNRGAGSWVSHQVEDYPDGTRVKFIVN

Nucleotide


Download         Length: 372 bp        

>NTDB_id=981876 NST83_RS16620 WP_342417975.1 3675385..3675756(-) (nucA/comI) [Paenibacillus sp. FSL R10-2782]
ATGCAAAGTGCTTATGCAGAACCTGTAGTGAACATGCAGAGGGCAGCAGCAGAGTATACCTTGAACTTCCCAACCTCTCG
CTATCCGGAAACCGGGGCGCATATTAAGGATGCAATTGCAACCGGGCATTCTTCGGTTTGTACGATTGACCGAGACGGGG
CCGAGGAAAATCGCAGAGAGTCCTTAAAGGGATATCCGACCAAAAAAGGATATGACCGTGACGAGTGGCCGATGGCGATG
TGTGCAGAGGGAGGGGCAGGGGCAGACATTCGTTATATAAGCCCTAGTGATAATCGTGGCGCAGGATCATGGGTAAGTCA
TCAAGTGGAAGATTATCCGGATGGAACGCGGGTTAAATTTATAGTGAATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(26-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.154

84.553

0.602

Multiple sequence alignment