Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NST83_RS16115 Genome accession   NZ_CP151951
Coordinates   3560207..3562057 (+) Length   616 a.a.
NCBI ID   WP_342414909.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL R10-2782     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3555207..3567057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST83_RS16095 (NST83_16095) - 3555946..3556188 (-) 243 WP_137063801.1 hypothetical protein -
  NST83_RS16100 (NST83_16100) - 3556276..3557751 (-) 1476 WP_342414906.1 PLP-dependent aminotransferase family protein -
  NST83_RS16105 (NST83_16105) - 3557982..3558392 (+) 411 WP_342414907.1 MarR family winged helix-turn-helix transcriptional regulator -
  NST83_RS16110 (NST83_16110) rcrP 3558451..3560214 (+) 1764 WP_342414908.1 ABC transporter ATP-binding protein Regulator
  NST83_RS16115 (NST83_16115) rcrQ 3560207..3562057 (+) 1851 WP_342414909.1 ABC transporter ATP-binding protein Regulator
  NST83_RS16120 (NST83_16120) - 3562448..3563668 (+) 1221 WP_137063805.1 PLP-dependent aminotransferase family protein -
  NST83_RS16130 (NST83_16130) - 3564446..3565012 (-) 567 WP_342414910.1 flavin reductase family protein -
  NST83_RS16135 (NST83_16135) - 3565077..3566192 (-) 1116 WP_137063807.1 Nif3-like dinuclear metal center hexameric protein -
  NST83_RS16140 (NST83_16140) - 3566168..3566929 (-) 762 WP_342414911.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67910.49 Da        Isoelectric Point: 6.5079

>NTDB_id=981875 NST83_RS16115 WP_342414909.1 3560207..3562057(+) (rcrQ) [Paenibacillus sp. FSL R10-2782]
MDKNEHTVDSQHMKTKQRGPMGGGPAGGMGAGEKANDFKKTISQLLSYIKAYVPMIILSMLLALVGSAFNVIGPGKLSDI
ANLIQEGIVTGVDVSAVQKIVLVLVLLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKINHMPLKYFDATSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTFTGIVATLIGFSLMTVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEKAAKEEFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQHAITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADESDKTKKLDNAKGDVEFKHVRFGYNQDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRENIAFSKEHVTH
EQVEAACRAVGLHSFLKTLPQGYDTVLDDKATLSAGQKQLITIARAMIEDAPMLILDEATSSVDTRTELLIQQAMDRLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIETGNHEELLAKGSFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=981875 NST83_RS16115 WP_342414909.1 3560207..3562057(+) (rcrQ) [Paenibacillus sp. FSL R10-2782]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCATATGAAAACGAAACAGCGAGGTCCCATGGGTGGAGGTCCTGCGGG
GGGCATGGGTGCTGGTGAAAAAGCGAATGATTTTAAAAAGACCATCAGCCAGCTTTTATCCTACATTAAGGCCTATGTGC
CCATGATTATACTCTCTATGTTGCTGGCCCTGGTCGGTTCCGCCTTCAACGTCATTGGTCCGGGTAAGCTCAGCGATATT
GCCAACCTGATCCAGGAAGGAATCGTAACAGGGGTTGATGTGAGTGCTGTCCAGAAGATTGTTCTTGTATTGGTGCTTTT
GTATGGTTTTGGTCTTATCTTTAACTATTTCCAAGGCTTCATTACGGCGACCGTGTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCCCGAAAAATCAATCATATGCCTTTGAAGTATTTTGATGCTACGAGCTACGGTAATGTGCTCAGCCGT
GTGACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGCGCGCTGGCAACCTTCGT
AGGCGCCTTGATTATGATGCTGTATACAAACTGGATCATGACCTTTACCGGGATTGTAGCTACGCTGATCGGTTTTTCCC
TGATGACCGTGATTATGAAGCATTCACAGAAATATTTTGTAGCACAGCAAGCGGAACTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCCGGTCATAACGTAGTCAAGGTATATAACGGAGAAAAAGCAGCCAAGGAAGAGTTCCATGGCATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAGTTCATGTCAGGCCTGATGATGCCGGTTATGATGTTCATCGGGAATT
TCGGGTATGTCGCAGTCTGTGTCGTGGGCGCTTTGCTGGTGAACCAACATGCTATAACGATCGGAACTATTGTGGCCTTC
ATGGTGTATATTCGTCTCTTTACACAGCCCTTGTCACAGCTGGCACAGGCCGCAACCAATCTGCAATCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCGGATGAGAGCGACAAGACCAAGAAGCTGGACAACGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGTTATAACCAAGACCGTATGATTATCAAAGACTTCTCCATGAAAGCT
GAAGCCGGTCAGAAAATTGCCATTGTGGGTCCGACAGGCGCCGGTAAGACGACGCTCGTGAATTTACTCATGCGGTTCTA
TGAGCTGAACGACGGAGAAATCTATATTGACGGAACCCCGATCAGCCAATTAACACGTGAGAATATTCATGAATTATTCT
GTATGGTGCTGCAGGATACCTGGCTGTTTGAAGGAACGATCCGTGAGAATATCGCCTTTTCCAAAGAGCATGTTACCCAT
GAACAGGTAGAAGCCGCATGTAGAGCGGTGGGGCTACACAGCTTCCTTAAAACACTGCCGCAGGGCTATGATACGGTGCT
GGACGACAAAGCCACTCTCTCTGCCGGTCAAAAGCAATTGATCACCATTGCAAGAGCCATGATTGAAGATGCACCCATGC
TCATTCTAGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCGGCTTACCGTA
GGGAAAACCTCCTTTGTGATTGCCCACCGCCTCTCAACGATCAAGAACGCCGATCTGATTCTAGTCATGAAGGACGGTGA
CATTATCGAAACAGGTAACCATGAGGAATTGCTGGCTAAAGGCAGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(56-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.633

93.669

0.521

Multiple sequence alignment