Detailed information NTG0981869

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACKUFZ_RS16145
• Genome accession: NZ_CP183097
• Coordinates: 3189035..3190027 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 446
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3184035..3195027

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKUFZ_RS16115 (ACKUFZ_16095)	ispD	3184096..3184806 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACKUFZ_RS16120 (ACKUFZ_16100)	ispF	3184806..3185285 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACKUFZ_RS16125 (ACKUFZ_16105)	truD	3185282..3186331 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACKUFZ_RS16130 (ACKUFZ_16110)	surE	3186312..3187073 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACKUFZ_RS16135 (ACKUFZ_16115)	pcm	3187067..3187693 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACKUFZ_RS16140 (ACKUFZ_16120)	nlpD	3187878..3188972 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACKUFZ_RS16145 (ACKUFZ_16125)	rpoS	3189035..3190027 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACKUFZ_RS16150 (ACKUFZ_16130)	-	3190198..3190749 (-)	552	WP_001179444.1	flavodoxin family protein	-
ACKUFZ_RS16155 (ACKUFZ_16135)	-	3190974..3192017 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACKUFZ_RS16160 (ACKUFZ_16140)	ygbN	3192160..3193524 (-)	1365	WP_000104433.1	GntP family transporter	-
ACKUFZ_RS16165 (ACKUFZ_16145)	ygbM	3193613..3194389 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=981869 ACKUFZ_RS16145 WP_000081550.1 3189035..3190027(+) (rpoS) [Escherichia coli strain 446]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=981869 ACKUFZ_RS16145 WP_000081550.1 3189035..3190027(+) (rpoS) [Escherichia coli strain 446]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715