Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ68_RS21955 Genome accession   NZ_CP151949
Coordinates   4939927..4940880 (-) Length   317 a.a.
NCBI ID   WP_342427174.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0158     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4934927..4945880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ68_RS21930 (NSQ68_21930) - 4935382..4936293 (-) 912 WP_342427171.1 aldo/keto reductase -
  NSQ68_RS21935 (NSQ68_21935) - 4936465..4937208 (-) 744 WP_342427172.1 alpha/beta hydrolase-fold protein -
  NSQ68_RS21940 (NSQ68_21940) - 4937242..4938222 (-) 981 WP_307353598.1 siderophore ABC transporter substrate-binding protein -
  NSQ68_RS21945 (NSQ68_21945) - 4938235..4938993 (-) 759 WP_307353596.1 ABC transporter ATP-binding protein -
  NSQ68_RS21950 (NSQ68_21950) - 4938987..4939937 (-) 951 WP_342427173.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ68_RS21955 (NSQ68_21955) ceuB 4939927..4940880 (-) 954 WP_342427174.1 ABC transporter permease Machinery gene
  NSQ68_RS21960 (NSQ68_21960) - 4941205..4941882 (+) 678 WP_342429151.1 response regulator transcription factor -
  NSQ68_RS21965 (NSQ68_21965) - 4941884..4942801 (+) 918 WP_342427175.1 HAMP domain-containing sensor histidine kinase -
  NSQ68_RS21970 (NSQ68_21970) - 4942910..4943587 (+) 678 WP_342427176.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=981852 NSQ68_RS21955 WP_342427174.1 4939927..4940880(-) (ceuB) [Paenibacillus sp. FSL L8-0158]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLVFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSVLFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=981852 NSQ68_RS21955 WP_342427174.1 4939927..4940880(-) (ceuB) [Paenibacillus sp. FSL L8-0158]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGGAACCGATTTGTATCGCCCACCACCGCG
GGGACGATGGATGCGGCACGACTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTTTAGGGGGAACGCTGGTTTTTATGAAGATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTGACGACTTTTTTTGCTTACAAATACAATCTGATT
CAGGGCATTTCTTCGTGGATGCAGGGAGATTTTTCTCTAATCATGAGTGGTCGCTATGAGATGTTATATCTTAGTGTTCC
TTTGGTTGCGCTGGCGTACATATATGCGAACCGTTTTACAATTGCAGGCATGGGCGAGGATTTTGCGGCCAATTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTCGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGTCTGGCCCATAC
AGCGATCCTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGAGTGATCATTTATCCGTATGAAATTTCTGTAG
GACTTACGGTTGGTGTGATCGGGAGCGTGTTGTTCTTGTATTTGCTGTTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.794

99.369

0.505

Multiple sequence alignment