Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NSQ68_RS16085 Genome accession   NZ_CP151949
Coordinates   3676057..3676494 (-) Length   145 a.a.
NCBI ID   WP_307346680.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL L8-0158     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3671057..3681494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ68_RS16070 (NSQ68_16070) - 3672353..3673978 (-) 1626 WP_342426508.1 response regulator -
  NSQ68_RS16075 (NSQ68_16075) - 3673950..3675773 (-) 1824 WP_342426509.1 sensor histidine kinase -
  NSQ68_RS16080 (NSQ68_16080) - 3675888..3676040 (+) 153 WP_165150326.1 hypothetical protein -
  NSQ68_RS16085 (NSQ68_16085) nucA/comI 3676057..3676494 (-) 438 WP_307346680.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NSQ68_RS16090 (NSQ68_16090) - 3676635..3676829 (+) 195 WP_013310963.1 hypothetical protein -
  NSQ68_RS16095 (NSQ68_16095) - 3677215..3677517 (+) 303 WP_013310964.1 hypothetical protein -
  NSQ68_RS16100 (NSQ68_16100) - 3677592..3679478 (-) 1887 WP_342426510.1 tenascin -
  NSQ68_RS16105 (NSQ68_16105) - 3679599..3680021 (-) 423 WP_307346689.1 hypothetical protein -
  NSQ68_RS16110 (NSQ68_16110) - 3680038..3680706 (-) 669 WP_342426511.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15943.14 Da        Isoelectric Point: 9.3698

>NTDB_id=981845 NSQ68_RS16085 WP_307346680.1 3676057..3676494(-) (nucA/comI) [Paenibacillus sp. FSL L8-0158]
MKKKLLSFIALVLLAAGAYWFEGGNLLTKMTGENPPSSAQVTLQFPSGRYPETAQHIKEAIQAGKSPVCTIDREGAEQNR
KHSLTGVPTRKGYDRDEWPMAMCSEGGKGANVKYIAPKDNRGAGSWVSHQLDEYEDGTRVKFVVK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=981845 NSQ68_RS16085 WP_307346680.1 3676057..3676494(-) (nucA/comI) [Paenibacillus sp. FSL L8-0158]
TTGAAGAAAAAGTTGCTAAGTTTTATAGCTTTAGTGCTGCTAGCTGCGGGCGCGTACTGGTTTGAAGGAGGCAATCTTCT
TACGAAAATGACAGGAGAGAACCCGCCTTCCTCGGCTCAGGTAACGCTACAATTCCCGTCAGGTCGTTACCCTGAAACGG
CGCAGCATATTAAGGAAGCCATTCAGGCGGGAAAATCACCGGTATGCACAATTGACCGTGAAGGAGCCGAGCAAAATCGT
AAGCATTCGCTTACAGGTGTTCCCACTCGTAAGGGATACGATCGTGATGAATGGCCGATGGCTATGTGTTCAGAAGGTGG
CAAAGGTGCAAATGTCAAATACATAGCTCCTAAGGATAATCGTGGGGCAGGATCATGGGTTAGTCATCAATTAGATGAGT
ATGAGGATGGAACTCGTGTGAAATTTGTTGTGAAATAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.308

71.724

0.483

Multiple sequence alignment