Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MHI21_RS21705 Genome accession   NZ_CP151948
Coordinates   4877009..4877962 (-) Length   317 a.a.
NCBI ID   WP_025721924.1    Uniprot ID   -
Organism   Paenibacillus sp. FSL H8-0168     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4872009..4882962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI21_RS21680 (MHI21_21680) - 4872478..4873389 (-) 912 WP_342418891.1 aldo/keto reductase -
  MHI21_RS21685 (MHI21_21685) - 4873547..4874290 (-) 744 WP_342418892.1 alpha/beta hydrolase-fold protein -
  MHI21_RS21690 (MHI21_21690) - 4874324..4875304 (-) 981 WP_342418893.1 siderophore ABC transporter substrate-binding protein -
  MHI21_RS21695 (MHI21_21695) - 4875317..4876075 (-) 759 WP_028541804.1 ABC transporter ATP-binding protein -
  MHI21_RS21700 (MHI21_21700) - 4876069..4877019 (-) 951 WP_316244224.1 iron chelate uptake ABC transporter family permease subunit -
  MHI21_RS21705 (MHI21_21705) ceuB 4877009..4877962 (-) 954 WP_025721924.1 ABC transporter permease Machinery gene
  MHI21_RS21710 (MHI21_21710) - 4878290..4878967 (+) 678 WP_342420235.1 response regulator transcription factor -
  MHI21_RS21715 (MHI21_21715) - 4878964..4879881 (+) 918 WP_342420236.1 HAMP domain-containing sensor histidine kinase -
  MHI21_RS21720 (MHI21_21720) - 4879989..4880666 (+) 678 WP_342418894.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34732.72 Da        Isoelectric Point: 9.9012

>NTDB_id=981820 MHI21_RS21705 WP_025721924.1 4877009..4877962(-) (ceuB) [Paenibacillus sp. FSL H8-0168]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=981820 MHI21_RS21705 WP_025721924.1 4877009..4877962(-) (ceuB) [Paenibacillus sp. FSL H8-0168]
ATGAAATTACGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGATTGATCATGCAGCAGCTTACCCGAAACCGATTTGTATCGCCCACCACCGCA
GGGACGATGGATGCGGCACGACTAGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTTTAGGGGGAACGCTGATTTTTATGAAAATACTGGATAAAATTCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGCTTGATGTTTGGAGGTATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTATGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGCTGGCGTACATATATGCGAATCGTTTCACAATTGCAGGCATGGGCGAGGATTTTGCGGCGAATTTGGGAG
TTCATTATAAGCGCACCGTCAATGTTGGGTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCAATCCTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGCGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGTTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment