Detailed information NTG0981791

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACKUFX_RS18875
• Genome accession: NZ_CP183089
• Coordinates: 3783243..3784235 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 447
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3778243..3789235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKUFX_RS18845 (ACKUFX_18810)	ispD	3778304..3779014 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACKUFX_RS18850 (ACKUFX_18815)	ispF	3779014..3779493 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACKUFX_RS18855 (ACKUFX_18820)	truD	3779490..3780539 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ACKUFX_RS18860 (ACKUFX_18825)	surE	3780520..3781281 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACKUFX_RS18865 (ACKUFX_18830)	pcm	3781275..3781901 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACKUFX_RS18870 (ACKUFX_18835)	nlpD	3782086..3783180 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ACKUFX_RS18875 (ACKUFX_18840)	rpoS	3783243..3784235 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACKUFX_RS18880 (ACKUFX_18845)	-	3784406..3784957 (-)	552	WP_001179444.1	flavodoxin family protein	-
ACKUFX_RS18885 (ACKUFX_18850)	-	3785182..3786225 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ACKUFX_RS18890 (ACKUFX_18855)	ygbN	3786368..3787732 (-)	1365	WP_000104433.1	GntP family transporter	-
ACKUFX_RS18895 (ACKUFX_18860)	ygbM	3787821..3788597 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=981791 ACKUFX_RS18875 WP_000081550.1 3783243..3784235(+) (rpoS) [Escherichia coli strain 447]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=981791 ACKUFX_RS18875 WP_000081550.1 3783243..3784235(+) (rpoS) [Escherichia coli strain 447]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715