Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   NYE22_RS16025 Genome accession   NZ_CP151946
Coordinates   2988223..2989374 (-) Length   383 a.a.
NCBI ID   WP_342411971.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 2983223..2994374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS16000 (NYE22_16000) cwlQ 2983366..2984100 (+) 735 WP_342411969.1 bifunctional muramidase/murein lytic transglycosylase -
  NYE22_RS16005 (NYE22_16005) - 2984355..2984753 (+) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  NYE22_RS16010 (NYE22_16010) spxH 2984750..2985649 (+) 900 WP_003245184.1 protease adaptor protein SpxH -
  NYE22_RS16015 (NYE22_16015) - 2985963..2986130 (+) 168 WP_003244944.1 hypothetical protein -
  NYE22_RS16020 (NYE22_16020) pepF 2986164..2987993 (-) 1830 WP_342411970.1 oligoendopeptidase F -
  NYE22_RS16025 (NYE22_16025) coiA 2988223..2989374 (-) 1152 WP_342411971.1 competence protein CoiA Machinery gene
  NYE22_RS16030 (NYE22_16030) - 2989418..2989540 (+) 123 WP_003245684.1 hypothetical protein -
  NYE22_RS16035 (NYE22_16035) mecA 2989535..2990191 (-) 657 WP_003245194.1 adaptor protein MecA Regulator
  NYE22_RS16040 (NYE22_16040) - 2990158..2990298 (-) 141 WP_119122854.1 hypothetical protein -
  NYE22_RS16045 (NYE22_16045) - 2990468..2991124 (+) 657 WP_003232944.1 TerC family protein -
  NYE22_RS16050 (NYE22_16050) spx 2991170..2991565 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  NYE22_RS16055 (NYE22_16055) - 2991746..2992324 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  NYE22_RS16060 (NYE22_16060) - 2992488..2993705 (-) 1218 WP_080286182.1 MFS transporter -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44987.13 Da        Isoelectric Point: 9.8290

>NTDB_id=981733 NYE22_RS16025 WP_342411971.1 2988223..2989374(-) (coiA) [Bacillus sp. FSL K6-1560]
MFSAVTEDGQLFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKEINRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIYNK
YIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPEGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=981733 NYE22_RS16025 WP_342411971.1 2988223..2989374(-) (coiA) [Bacillus sp. FSL K6-1560]
TTGTTTAGTGCTGTGACTGAAGACGGCCAACTGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACACAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGTGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCAAAGGAAATAAATCGCCTTAGGCTGCTGTTTTATGAGAAGCGGCAGACGCCTTTTTCTTTTCTGCCAAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAAGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGATAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTTATAATAAG
TACATTGCACTCAGGTTTGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGAAGGCGGCATACACTCAATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

97.587

97.389

0.95


Multiple sequence alignment