Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NYE22_RS11975 Genome accession   NZ_CP151946
Coordinates   2139530..2140660 (-) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2137630..2147301 2139530..2140660 within 0


Gene organization within MGE regions


Location: 2137630..2147301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS11950 (NYE22_11950) - 2137636..2138193 (+) 558 WP_161986060.1 SMI1/KNR4 family protein -
  NYE22_RS11955 (NYE22_11955) - 2138294..2138449 (+) 156 Protein_2329 T7SS effector LXG polymorphic toxin -
  NYE22_RS11960 (NYE22_11960) - 2138447..2138821 (+) 375 Protein_2330 UV damage repair protein UvrX -
  NYE22_RS11965 (NYE22_11965) - 2139043..2139243 (+) 201 WP_021481449.1 hypothetical protein -
  NYE22_RS11970 (NYE22_11970) - 2139397..2139540 (-) 144 WP_153801665.1 hypothetical protein -
  NYE22_RS11975 (NYE22_11975) rapC 2139530..2140660 (-) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  NYE22_RS11980 (NYE22_11980) - 2140793..2140939 (-) 147 Protein_2334 phage holin -
  NYE22_RS11985 (NYE22_11985) - 2141722..2141895 (-) 174 WP_154213112.1 hypothetical protein -
  NYE22_RS11990 (NYE22_11990) - 2142170..2142445 (-) 276 Protein_2336 SOS response-associated peptidase family protein -
  NYE22_RS11995 (NYE22_11995) - 2142626..2142991 (-) 366 WP_161986059.1 hypothetical protein -
  NYE22_RS12000 (NYE22_12000) - 2143637..2144338 (+) 702 WP_038829963.1 hypothetical protein -
  NYE22_RS12005 (NYE22_12005) - 2144539..2144765 (+) 227 Protein_2339 helix-turn-helix transcriptional regulator -
  NYE22_RS12010 (NYE22_12010) - 2145672..2145836 (+) 165 WP_021481433.1 hypothetical protein -
  NYE22_RS12015 (NYE22_12015) - 2145886..2146518 (+) 633 WP_161986058.1 hypothetical protein -
  NYE22_RS12020 (NYE22_12020) - 2146553..2146891 (-) 339 WP_015251936.1 helix-turn-helix transcriptional regulator -
  NYE22_RS12025 (NYE22_12025) - 2147062..2147301 (+) 240 WP_014477028.1 TM2 domain-containing protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=981722 NYE22_RS11975 WP_021481447.1 2139530..2140660(-) (rapC) [Bacillus sp. FSL K6-1560]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=981722 NYE22_RS11975 WP_021481447.1 2139530..2140660(-) (rapC) [Bacillus sp. FSL K6-1560]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment