Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NYE22_RS10235 Genome accession   NZ_CP151946
Coordinates   1878151..1878771 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1873151..1883771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS10215 (NYE22_10215) dnaD 1873442..1874140 (+) 699 WP_064671079.1 DNA replication protein DnaD -
  NYE22_RS10220 (NYE22_10220) nth 1874159..1874818 (+) 660 WP_009967580.1 endonuclease III -
  NYE22_RS10225 (NYE22_10225) - 1874815..1875309 (+) 495 WP_064671080.1 YpoC family protein -
  NYE22_RS10230 (NYE22_10230) - 1875385..1878129 (-) 2745 WP_064671081.1 PBP1A family penicillin-binding protein -
  NYE22_RS10235 (NYE22_10235) recU 1878151..1878771 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  NYE22_RS10240 (NYE22_10240) - 1878812..1879774 (+) 963 WP_342412507.1 DUF2515 domain-containing protein -
  NYE22_RS10245 (NYE22_10245) sspM 1879799..1879903 (-) 105 WP_342412509.1 acid-soluble spore protein SspM -
  NYE22_RS10250 (NYE22_10250) - 1880102..1880347 (+) 246 WP_021481526.1 DUF5446 family protein -
  NYE22_RS10255 (NYE22_10255) - 1880393..1880764 (+) 372 WP_021481525.1 YppE family protein -
  NYE22_RS10260 (NYE22_10260) - 1880803..1880991 (-) 189 WP_003230690.1 YppF family protein -
  NYE22_RS10265 (NYE22_10265) - 1881179..1881556 (+) 378 WP_004398696.1 YppG family protein -
  NYE22_RS10270 (NYE22_10270) - 1881577..1881996 (-) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  NYE22_RS10275 (NYE22_10275) - 1882134..1882640 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=981721 NYE22_RS10235 WP_004399067.1 1878151..1878771(-) (recU) [Bacillus sp. FSL K6-1560]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=981721 NYE22_RS10235 WP_004399067.1 1878151..1878771(-) (recU) [Bacillus sp. FSL K6-1560]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment