Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NYE22_RS09245 Genome accession   NZ_CP151946
Coordinates   1699340..1700143 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1694340..1705143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS09225 (NYE22_09225) - 1694452..1695297 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  NYE22_RS09230 (NYE22_09230) argR 1695395..1695844 (+) 450 WP_014114358.1 arginine repressor ArgR -
  NYE22_RS09235 (NYE22_09235) recN 1695879..1697609 (+) 1731 WP_342412461.1 DNA repair protein RecN Machinery gene
  NYE22_RS09240 (NYE22_09240) spoIVB 1697784..1699064 (+) 1281 WP_103803304.1 SpoIVB peptidase -
  NYE22_RS09245 (NYE22_09245) spo0A 1699340..1700143 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NYE22_RS09250 (NYE22_09250) - 1700749..1702659 (+) 1911 WP_161986193.1 glycosyl hydrolase family 28-related protein -
  NYE22_RS09255 (NYE22_09255) - 1702671..1702958 (+) 288 WP_342412462.1 hypothetical protein -
  NYE22_RS09260 (NYE22_09260) - 1703162..1704280 (-) 1119 WP_342412463.1 NADH-dependent flavin oxidoreductase -
  NYE22_RS09265 (NYE22_09265) - 1704353..1704505 (-) 153 WP_014480226.1 hypothetical protein -
  NYE22_RS09270 (NYE22_09270) - 1704813..1705106 (+) 294 WP_003230284.1 lipoprotein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=981720 NYE22_RS09245 WP_003226427.1 1699340..1700143(+) (spo0A) [Bacillus sp. FSL K6-1560]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=981720 NYE22_RS09245 WP_003226427.1 1699340..1700143(+) (spo0A) [Bacillus sp. FSL K6-1560]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATCGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTAG
CTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment