Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NYE22_RS08715 Genome accession   NZ_CP151946
Coordinates   1609504..1610271 (+) Length   255 a.a.
NCBI ID   WP_342412449.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-1560     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1604504..1615271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE22_RS08685 (NYE22_08685) pgpH 1604800..1606935 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  NYE22_RS08690 (NYE22_08690) ybeY 1606936..1607409 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  NYE22_RS08695 (NYE22_08695) - 1607390..1607761 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  NYE22_RS08700 (NYE22_08700) - 1607880..1608290 (+) 411 WP_003230049.1 cytidine deaminase -
  NYE22_RS08705 (NYE22_08705) era 1608271..1609176 (+) 906 WP_003230051.1 GTPase Era -
  NYE22_RS08710 (NYE22_08710) - 1609324..1609467 (+) 144 WP_003230053.1 YqzL family protein -
  NYE22_RS08715 (NYE22_08715) recO 1609504..1610271 (+) 768 WP_342412449.1 DNA repair protein RecO Machinery gene
  NYE22_RS08720 (NYE22_08720) glyQ 1610568..1611455 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  NYE22_RS08725 (NYE22_08725) glyS 1611448..1613487 (+) 2040 WP_342412450.1 glycine--tRNA ligase subunit beta -
  NYE22_RS08730 (NYE22_08730) ccpN 1613621..1614259 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  NYE22_RS08735 (NYE22_08735) - 1614285..1615097 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29300.01 Da        Isoelectric Point: 8.3080

>NTDB_id=981709 NYE22_RS08715 WP_342412449.1 1609504..1610271(+) (recO) [Bacillus sp. FSL K6-1560]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGAFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKANPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=981709 NYE22_RS08715 WP_342412449.1 1609504..1610271(+) (recO) [Bacillus sp. FSL K6-1560]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTGCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGGC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTTCATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

98.824

100

0.988

Multiple sequence alignment