Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   ACNM7T_RS19315 Genome accession   NZ_CP183041
Coordinates   3877467..3878156 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Scm     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3872467..3883156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS19295 (ACNM7T_19295) - 3873372..3873719 (-) 348 WP_004393256.1 YxeA family protein -
  ACNM7T_RS19300 (ACNM7T_19300) yxdM 3873733..3875601 (-) 1869 WP_234631093.1 ABC transporter permease YxdM -
  ACNM7T_RS19305 (ACNM7T_19305) yxdL 3875576..3876349 (-) 774 WP_007614823.1 ABC transporter ATP-binding protein YxdL -
  ACNM7T_RS19310 (ACNM7T_19310) yxdK 3876493..3877470 (-) 978 WP_020958066.1 two-component system sensor histidine kinase YxdK -
  ACNM7T_RS19315 (ACNM7T_19315) braR 3877467..3878156 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  ACNM7T_RS19320 (ACNM7T_19320) fba 3878264..3879136 (-) 873 WP_012118840.1 class II fructose-1,6-bisphosphate aldolase -
  ACNM7T_RS19325 (ACNM7T_19325) iolI 3879139..3879981 (-) 843 WP_007407832.1 2-keto-myo-inositol isomerase -
  ACNM7T_RS19330 (ACNM7T_19330) - 3880069..3880938 (-) 870 WP_007407833.1 sugar phosphate isomerase/epimerase family protein -
  ACNM7T_RS19335 (ACNM7T_19335) - 3880958..3881992 (-) 1035 WP_020958069.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=981638 ACNM7T_RS19315 WP_004393241.1 3877467..3878156(-) (braR) [Bacillus amyloliquefaciens strain Scm]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=981638 ACNM7T_RS19315 WP_004393241.1 3877467..3878156(-) (braR) [Bacillus amyloliquefaciens strain Scm]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAAGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTACGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
TATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAATTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393