Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   NYE38_RS13585 Genome accession   NZ_CP151944
Coordinates   2730135..2730887 (-) Length   250 a.a.
NCBI ID   WP_167340805.1    Uniprot ID   -
Organism   Bacillus sp. EU63     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2725135..2735887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE38_RS13560 (NYE38_13560) mreC 2725571..2726434 (-) 864 WP_016938781.1 rod shape-determining protein MreC -
  NYE38_RS13565 (NYE38_13565) mreB 2726465..2727478 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  NYE38_RS13570 (NYE38_13570) radC 2727570..2728265 (-) 696 WP_007408165.1 DNA repair protein RadC -
  NYE38_RS13575 (NYE38_13575) - 2728297..2728866 (-) 570 WP_012118105.1 Maf family protein -
  NYE38_RS13580 (NYE38_13580) - 2729007..2730008 (-) 1002 WP_025649687.1 SPOR domain-containing protein -
  NYE38_RS13585 (NYE38_13585) comC 2730135..2730887 (-) 753 WP_167340805.1 A24 family peptidase Machinery gene
  NYE38_RS13590 (NYE38_13590) - 2731028..2732320 (-) 1293 WP_017418285.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  NYE38_RS13595 (NYE38_13595) - 2732379..2735021 (-) 2643 WP_017418286.1 valine--tRNA ligase -
  NYE38_RS13600 (NYE38_13600) - 2735474..2735665 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27223.93 Da        Isoelectric Point: 9.4293

>NTDB_id=981617 NYE38_RS13585 WP_167340805.1 2730135..2730887(-) (comC) [Bacillus sp. EU63]
MLLILFFLGLIFGSFFYTAACRIPLRISVISTRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=981617 NYE38_RS13585 WP_167340805.1 2730135..2730887(-) (comC) [Bacillus sp. EU63]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGACGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGTATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGAGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58

Multiple sequence alignment