Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NYE38_RS12430 Genome accession   NZ_CP151944
Coordinates   2529088..2529855 (-) Length   255 a.a.
NCBI ID   WP_106067885.1    Uniprot ID   -
Organism   Bacillus sp. EU63     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2524088..2534855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE38_RS12410 (NYE38_12410) - 2524291..2525103 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  NYE38_RS12415 (NYE38_12415) ccpN 2525129..2525767 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  NYE38_RS12420 (NYE38_12420) glyS 2525867..2527906 (-) 2040 WP_340802410.1 glycine--tRNA ligase subunit beta -
  NYE38_RS12425 (NYE38_12425) glyQ 2527899..2528786 (-) 888 WP_106067886.1 glycine--tRNA ligase subunit alpha -
  NYE38_RS12430 (NYE38_12430) recO 2529088..2529855 (-) 768 WP_106067885.1 DNA repair protein RecO Machinery gene
  NYE38_RS12435 (NYE38_12435) - 2529892..2530035 (-) 144 WP_007408286.1 YqzL family protein -
  NYE38_RS12440 (NYE38_12440) era 2530191..2531096 (-) 906 WP_014470680.1 GTPase Era -
  NYE38_RS12445 (NYE38_12445) - 2531077..2531487 (-) 411 WP_017418172.1 cytidine deaminase -
  NYE38_RS12450 (NYE38_12450) - 2531611..2531985 (-) 375 WP_340803135.1 diacylglycerol kinase family protein -
  NYE38_RS12455 (NYE38_12455) ybeY 2531966..2532439 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  NYE38_RS12460 (NYE38_12460) - 2532440..2534572 (-) 2133 WP_065180881.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29329.00 Da        Isoelectric Point: 9.0171

>NTDB_id=981610 NYE38_RS12430 WP_106067885.1 2529088..2529855(-) (recO) [Bacillus sp. EU63]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSVRDNGFICHRCFGKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNELKRVIDLYYEEYSGLYLKSKRFL
DQMESMKHLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=981610 NYE38_RS12430 WP_106067885.1 2529088..2529855(-) (recO) [Bacillus sp. EU63]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTTACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAAGGGACTGACCCGGACGTGATCACCTTCA
TCGTTCAGATGAAAATGCTCGGCGTCATGGGACTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCCGGGACGGG
ACGTTTCATTTTTCGGTAAGAGATAATGGTTTTATCTGCCACCGCTGCTTTGGAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCATTAAAACAGGAAA
CCAAAAACGAACTTAAACGGGTTATCGATCTGTATTATGAGGAATATTCAGGGCTTTATTTAAAGTCTAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGCACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

90.588

100

0.906

Multiple sequence alignment