Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABXS88_RS01620 Genome accession   NZ_AP031572
Coordinates   341008..341637 (+) Length   209 a.a.
NCBI ID   WP_353673460.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 336008..346637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS01620 (OLK001_03120) vraR 341008..341637 (+) 630 WP_353673460.1 response regulator transcription factor Regulator
  ABXS88_RS01625 (OLK001_03130) - 341962..342600 (+) 639 WP_353673461.1 MOSC domain-containing protein -
  ABXS88_RS01630 (OLK001_03140) - 342638..343510 (+) 873 WP_353673462.1 alpha/beta hydrolase -
  ABXS88_RS01635 (OLK001_03150) - 343561..344559 (+) 999 WP_353673463.1 zinc-dependent alcohol dehydrogenase family protein -
  ABXS88_RS01640 (OLK001_03160) - 344632..345630 (+) 999 WP_353673464.1 alpha/beta hydrolase -
  ABXS88_RS01645 (OLK001_03170) - 345859..346506 (+) 648 WP_353673465.1 cysteine hydrolase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 22937.57 Da        Isoelectric Point: 6.7126

>NTDB_id=98161 ABXS88_RS01620 WP_353673460.1 341008..341637(+) (vraR) [Synechocystis sp. LKSZ1]
MSQTAVIRCLIVDDHAIVQQGLEAIINEETDMIVIGRAKDGIEAIQLFRQAQPDVTLMDLRMPQMGGVEAITAICAEFNT
ARIIVLTTYDGDEDIYRGLRAGSKGYLLKDCKPNELRTAIRTVHDGQQYIPPHVGAKLAQRMTNPELTARELEVLRLVAQ
GMNNLEIGTALSITESTVKSNINRILSKLGAKDRTQATIIALKRGIASL

Nucleotide


Download         Length: 630 bp        

>NTDB_id=98161 ABXS88_RS01620 WP_353673460.1 341008..341637(+) (vraR) [Synechocystis sp. LKSZ1]
ATGAGCCAAACAGCAGTTATTCGGTGTCTGATTGTGGACGATCATGCCATTGTACAACAAGGATTAGAAGCGATCATCAA
TGAAGAAACAGATATGATTGTGATTGGTCGTGCCAAAGACGGTATTGAAGCAATCCAGTTGTTCCGCCAAGCGCAACCTG
ACGTAACCTTAATGGACTTACGGATGCCCCAAATGGGAGGAGTGGAAGCGATTACTGCGATTTGTGCTGAATTTAACACG
GCTCGCATCATTGTATTGACGACATATGACGGAGATGAAGATATTTATCGGGGGTTACGAGCAGGTTCAAAGGGTTATCT
GCTCAAAGACTGTAAGCCCAACGAACTGCGAACTGCTATTCGCACCGTTCACGATGGGCAGCAGTATATTCCACCTCATG
TTGGCGCTAAGTTAGCCCAGCGAATGACCAATCCAGAGTTGACCGCTCGCGAATTAGAAGTGCTGCGGTTGGTGGCACAG
GGGATGAACAATCTGGAAATCGGTACTGCCTTAAGTATTACGGAAAGTACTGTCAAATCGAATATCAACCGCATTTTAAG
CAAGTTGGGAGCTAAAGATCGCACGCAAGCAACCATTATTGCCTTAAAACGAGGGATTGCCAGCCTATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-201)

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.049

98.086

0.373

Multiple sequence alignment