Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   ACNM7T_RS11075 Genome accession   NZ_CP183041
Coordinates   2266503..2267993 (-) Length   496 a.a.
NCBI ID   WP_094031812.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Scm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2261503..2272993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS11045 (ACNM7T_11045) gudB 2261568..2262842 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  ACNM7T_RS11050 (ACNM7T_11050) - 2263003..2263587 (-) 585 WP_003153412.1 genetic competence negative regulator -
  ACNM7T_RS11055 (ACNM7T_11055) - 2263739..2264527 (-) 789 WP_025284937.1 metallophosphoesterase -
  ACNM7T_RS11060 (ACNM7T_11060) - 2264614..2265072 (-) 459 WP_221663800.1 YpbF family protein -
  ACNM7T_RS11065 (ACNM7T_11065) - 2265141..2265923 (-) 783 WP_094031811.1 LysM peptidoglycan-binding domain-containing protein -
  ACNM7T_RS11070 (ACNM7T_11070) - 2265901..2266488 (-) 588 WP_015240111.1 CPBP family intramembrane glutamic endopeptidase -
  ACNM7T_RS11075 (ACNM7T_11075) recS 2266503..2267993 (-) 1491 WP_094031812.1 RecQ family ATP-dependent DNA helicase Machinery gene
  ACNM7T_RS11080 (ACNM7T_11080) - 2267986..2269044 (-) 1059 WP_032870103.1 helix-turn-helix domain-containing protein -
  ACNM7T_RS11085 (ACNM7T_11085) - 2269313..2269561 (+) 249 WP_003153403.1 ferredoxin -
  ACNM7T_RS11090 (ACNM7T_11090) - 2269703..2270275 (-) 573 WP_007409438.1 ECF transporter S component -
  ACNM7T_RS11095 (ACNM7T_11095) serA 2270764..2272341 (+) 1578 WP_007409437.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55958.97 Da        Isoelectric Point: 6.2484

>NTDB_id=981579 ACNM7T_RS11075 WP_094031812.1 2266503..2267993(-) (recS) [Bacillus amyloliquefaciens strain Scm]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVSVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTGDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=981579 ACNM7T_RS11075 WP_094031812.1 2266503..2267993(-) (recS) [Bacillus amyloliquefaciens strain Scm]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCGCCGCTCCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCTGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCTCTGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGACCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACTGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGGAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGGGTGATGAACGAAAGCTTC
GGGACGTCCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.347

100

0.683