Detailed information    

insolico Bioinformatically predicted

Overview


Name   pepF   Type   Regulator
Locus tag   NSS81_RS19330 Genome accession   NZ_CP151943
Coordinates   3850186..3852006 (+) Length   606 a.a.
NCBI ID   WP_342430263.1    Uniprot ID   -
Organism   Neobacillus sp. FSL H8-0543     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context


Location: 3845186..3857006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS81_RS19310 (NSS81_19310) spxA 3845410..3845805 (+) 396 WP_342430260.1 transcriptional regulator SpxA -
  NSS81_RS19315 (NSS81_19315) mecA 3846103..3846774 (+) 672 WP_342430261.1 adaptor protein MecA -
  NSS81_RS19320 (NSS81_19320) cls 3846845..3848356 (+) 1512 WP_342434080.1 cardiolipin synthase -
  NSS81_RS19325 (NSS81_19325) - 3848847..3850043 (+) 1197 WP_342430262.1 competence protein CoiA family protein -
  NSS81_RS19330 (NSS81_19330) pepF 3850186..3852006 (+) 1821 WP_342430263.1 oligoendopeptidase F Regulator
  NSS81_RS19335 (NSS81_19335) - 3852538..3853398 (-) 861 WP_342434081.1 ClpXP adapter SpxH family protein -
  NSS81_RS19340 (NSS81_19340) - 3853404..3853811 (-) 408 WP_342430264.1 globin -
  NSS81_RS19345 (NSS81_19345) - 3853974..3854564 (-) 591 WP_342430265.1 CYTH domain-containing protein -
  NSS81_RS19350 (NSS81_19350) - 3854717..3855355 (+) 639 WP_342430266.1 GTP pyrophosphokinase family protein -
  NSS81_RS19355 (NSS81_19355) - 3855398..3856198 (+) 801 WP_342430267.1 NAD kinase -

Sequence


Protein


Download         Length: 606 a.a.        Molecular weight: 69757.15 Da        Isoelectric Point: 4.9026

>NTDB_id=981553 NSS81_RS19330 WP_342430263.1 3850186..3852006(+) (pepF) [Neobacillus sp. FSL H8-0543]
MANETAAVKALPARSEISVEDTWRLEDIFTTDQEWESEFQEVKNQISGIKEFEGKLGESADTLYKALQFQDKLLERIGKL
YTYAHMRYDQDTTNSFYQGLDDRMKNLYSQAGSQLAFIVPEILSIDESKVTSFLNEKAELKLYEHAIAEINLQRPHVLSA
EVEAVLAEASEVMNSSSNTFGMLNNADLKFPSIKDENGEEVEITHGRYIRFLESSDQRVRRDAFKAVYDTYGNFRNTFAS
TISGNVKNDNFNARIRKYNSARHAALSGNNIPESVYDNLVNTINENLHLLHRYVKLRKKVLGLKELHMYDLYTPLVKDVK
MEIPYKEAEKLVVEGLAPLGEEYTKILKEGFENRWVDVHENKGKRSGAYSSGAYGTNPYILMNWQDNINNLFTLAHEFGH
SVHSYYTRKSQPYPYGNYSIFVAEVASTCNEALLNDHLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEYEHLIHQKA
QNNEALTADLLTEEYYSLNKKYFGEEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGYSAATALSKQILEEGEPAVKRYIE
FLSAGSSDYPIEVLKKAGVDMTSADPIRDACKVFEEKLNELEQLLS

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=981553 NSS81_RS19330 WP_342430263.1 3850186..3852006(+) (pepF) [Neobacillus sp. FSL H8-0543]
ATGGCTAATGAAACGGCAGCTGTAAAAGCTCTACCTGCTAGAAGTGAAATTTCAGTTGAGGATACTTGGAGATTAGAAGA
TATATTTACTACTGACCAGGAATGGGAAAGTGAATTTCAAGAAGTGAAGAATCAAATCTCCGGAATAAAGGAGTTTGAAG
GCAAATTAGGAGAAAGTGCTGATACTTTATATAAAGCACTTCAATTTCAAGATAAGCTCCTTGAGCGGATTGGAAAATTA
TATACATATGCGCATATGCGCTATGATCAAGATACGACTAATTCTTTTTATCAAGGGTTAGATGACAGGATGAAGAACTT
GTATTCCCAGGCTGGAAGCCAATTGGCATTCATTGTTCCGGAAATCCTTTCCATTGATGAAAGCAAGGTTACCAGTTTTC
TAAATGAGAAAGCGGAATTAAAGCTCTATGAACATGCCATTGCAGAAATTAACCTACAAAGACCGCATGTCCTGTCTGCA
GAGGTTGAAGCGGTGTTAGCGGAAGCAAGCGAGGTTATGAACAGTTCCAGCAATACATTTGGTATGTTAAATAATGCCGA
TTTAAAGTTTCCTTCTATAAAGGATGAAAATGGCGAAGAAGTAGAAATCACACATGGGCGCTATATTCGTTTCTTAGAAA
GTTCAGATCAGCGGGTTCGACGTGATGCCTTTAAAGCAGTATATGATACATACGGAAATTTCCGTAACACATTTGCTAGT
ACGATTAGCGGTAATGTGAAAAATGATAATTTTAATGCGCGAATTAGGAAATATAATTCCGCCAGACATGCGGCACTTTC
GGGCAATAATATCCCTGAAAGTGTGTATGATAACTTAGTTAATACGATTAATGAGAACCTGCATTTATTACATCGATATG
TAAAGCTACGTAAAAAGGTTTTGGGGCTTAAGGAGCTCCATATGTATGACCTGTATACGCCGTTGGTAAAAGATGTAAAA
ATGGAAATTCCTTATAAAGAGGCTGAAAAATTAGTTGTTGAAGGATTGGCCCCATTAGGTGAGGAATATACTAAGATTTT
AAAAGAAGGTTTTGAAAATCGTTGGGTAGATGTTCATGAAAATAAAGGAAAGCGCAGTGGCGCCTATTCCTCTGGTGCTT
ATGGGACGAATCCGTACATCCTCATGAATTGGCAGGATAATATAAATAATTTATTTACACTTGCCCATGAGTTTGGACAT
TCTGTTCACAGCTACTATACACGTAAATCACAGCCATACCCATACGGAAACTATTCGATTTTCGTTGCCGAGGTAGCTTC
AACCTGTAATGAAGCCTTATTGAATGATCATTTATTAAAGACAATAGATGATGAACAGAAACGGATATACCTTTTAAATC
ATTATTTAGAAGGCTTCAGGGGTACCGTGTTCCGCCAAACGATGTTTGCTGAATATGAGCATTTAATCCACCAGAAGGCG
CAAAACAATGAGGCGTTAACGGCTGATTTGTTAACAGAAGAATATTATTCCCTTAATAAAAAGTATTTTGGTGAAGAGGA
TATTGTAATTGATGAAGAAATTGGCTTAGAATGGTCGAGGATTCCACATTTCTATTACAATTATTATGTTTACCAATATG
CTACAGGTTATAGTGCAGCGACGGCATTAAGCAAGCAAATTTTAGAAGAGGGCGAGCCTGCGGTTAAACGTTATATTGAA
TTCCTTAGTGCAGGAAGTTCTGACTATCCGATTGAAGTGCTCAAGAAAGCTGGAGTGGATATGACAAGTGCAGACCCGAT
AAGAGATGCTTGTAAAGTATTTGAAGAAAAACTGAATGAATTAGAGCAACTATTATCATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.158

98.02

0.482


Multiple sequence alignment