Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NSS81_RS12755 Genome accession   NZ_CP151943
Coordinates   2596073..2597455 (+) Length   460 a.a.
NCBI ID   WP_342433837.1    Uniprot ID   -
Organism   Neobacillus sp. FSL H8-0543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2591073..2602455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS81_RS12735 (NSS81_12735) - 2591380..2591841 (+) 462 WP_342433833.1 CtsR family transcriptional regulator -
  NSS81_RS12740 (NSS81_12740) - 2591867..2592418 (+) 552 WP_342433834.1 UvrB/UvrC motif-containing protein -
  NSS81_RS12745 (NSS81_12745) - 2592420..2593493 (+) 1074 WP_342433835.1 protein arginine kinase -
  NSS81_RS12750 (NSS81_12750) clpC 2593507..2595948 (+) 2442 WP_342433836.1 ATP-dependent protease ATP-binding subunit ClpC -
  NSS81_RS12755 (NSS81_12755) radA 2596073..2597455 (+) 1383 WP_342433837.1 DNA repair protein RadA Machinery gene
  NSS81_RS12760 (NSS81_12760) disA 2597459..2598532 (+) 1074 WP_342433838.1 DNA integrity scanning diadenylate cyclase DisA -
  NSS81_RS12765 (NSS81_12765) - 2598734..2599816 (+) 1083 WP_342433839.1 PIN/TRAM domain-containing protein -
  NSS81_RS12770 (NSS81_12770) ispD 2599860..2600549 (+) 690 WP_342433840.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NSS81_RS12775 (NSS81_12775) ispF 2600552..2601034 (+) 483 WP_342433841.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49722.23 Da        Isoelectric Point: 7.3831

>NTDB_id=981542 NSS81_RS12755 WP_342433837.1 2596073..2597455(+) (radA) [Neobacillus sp. FSL H8-0543]
MAKRKTKFMCQECGYESPKWLGKCPGCGEWNKMVEEVEITGGNRRGAFAHSQGGSAILSKPMPITAIETLSEPRILTEMN
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLANKGNKVLYISGEESLHQTKLRASRLGISSENLLVYAETNLQE
INQTIENTNPGFVIVDSIQTVFHPEVTSAPGSVSQVRECTSELMRIGKTNGIAIFIVGHVTKEGSIAGPRLLEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKELGLEEVANPSEIFLEERSQGAAGSTVCASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLIMAVLEKRVGMLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTKATDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLGGWKSPRGIELIGVSTVSEALKAAFGG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=981542 NSS81_RS12755 WP_342433837.1 2596073..2597455(+) (radA) [Neobacillus sp. FSL H8-0543]
ATGGCAAAACGAAAAACGAAGTTTATGTGTCAGGAATGCGGTTATGAGTCTCCAAAATGGTTGGGAAAATGCCCTGGTTG
CGGAGAATGGAATAAAATGGTTGAAGAAGTAGAGATAACCGGCGGAAATAGGAGGGGGGCATTTGCTCACTCACAAGGCG
GTTCGGCAATTCTATCAAAACCAATGCCGATTACAGCAATTGAAACACTAAGTGAACCGCGAATTCTTACTGAAATGAAT
GAACTTAATCGGGTCCTTGGCGGTGGAGTGGTCAAGGGCTCGCTAGTATTAATTGGTGGCGACCCTGGTATCGGGAAATC
TACCCTTCTATTGCAAGTATCCTCACAGCTTGCAAATAAGGGAAATAAGGTGTTATACATTTCGGGTGAGGAATCATTAC
ATCAAACAAAGCTCAGGGCATCAAGATTAGGAATTTCCTCTGAGAATCTCCTCGTTTATGCTGAGACGAATTTACAAGAA
ATTAACCAAACTATTGAAAATACAAATCCTGGCTTTGTTATTGTAGATTCCATTCAAACGGTATTCCATCCTGAGGTTAC
TTCAGCGCCTGGGAGTGTATCACAGGTTCGTGAATGTACCTCTGAATTAATGAGAATTGGAAAGACAAATGGTATTGCCA
TTTTTATTGTTGGTCATGTAACGAAAGAAGGTTCTATTGCCGGACCAAGATTGCTTGAACATATGGTGGATACCGTGCTT
TATTTTGAAGGGGAAAGACATCATACGTATCGAATTTTAAGAGCAGTGAAAAACCGCTTTGGATCAACGAATGAAATGGG
AATTTTTGAAATGAAAGAGTTAGGTCTTGAAGAAGTGGCAAATCCGTCGGAAATTTTCCTTGAAGAGAGGTCACAAGGTG
CGGCAGGCTCCACCGTTTGCGCCTCTATGGAGGGGACACGTCCTGTCCTAGTTGAAATTCAAGCGCTAATTTCACCAACG
AGTTTTGGAAACCCAAGACGAATGGCAACAGGCATTGACCATAACCGAGTCCCCCTTATCATGGCGGTATTGGAAAAGCG
GGTGGGGATGCTTTTGCAAAATCAGGATGCTTATTTAAAGGTGGCTGGCGGGGTAAAACTTGATGAGCCTGCCATTGACT
TAGCTATTGCTGTGAGTATCGCCTCTAGCTTCCGTGATAAACCGACGAAAGCTACAGATTGCATTATTGGTGAAGTGGGC
CTTACAGGTGAAGTAAGGCGTGTCTCAAGGATTGAACAACGTGTCCAAGAAGCAGCTAAGCTTGGCTTTGAGCGAGTCAT
CTTACCGGCTAATAATCTGGGTGGCTGGAAAAGTCCAAGAGGAATCGAGTTAATTGGCGTTTCAACCGTAAGTGAAGCCT
TGAAGGCGGCGTTTGGAGGTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(366-432)

AAA domain (AAA_25)

(70-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

75.922

100

0.761
  radA Streptococcus mitis NCTC 12261

63.261

100

0.633
  radA Streptococcus pneumoniae Rx1

63.261

100

0.633
  radA Streptococcus pneumoniae D39

63.261

100

0.633
  radA Streptococcus pneumoniae R6

63.261

100

0.633
  radA Streptococcus pneumoniae TIGR4

63.261

100

0.633
  radA Streptococcus mitis SK321

63.261

100

0.633

Multiple sequence alignment