Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   ACNM7T_RS05275 Genome accession   NZ_CP183041
Coordinates   1019379..1022261 (+) Length   960 a.a.
NCBI ID   WP_234631226.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Scm     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1014379..1027261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS05250 (ACNM7T_05250) - 1014817..1015584 (+) 768 WP_015239501.1 enoyl-CoA hydratase -
  ACNM7T_RS05255 (ACNM7T_05255) - 1015609..1015794 (-) 186 WP_094031625.1 YhzD family protein -
  ACNM7T_RS05260 (ACNM7T_05260) - 1015900..1016796 (+) 897 WP_007409231.1 ABC transporter ATP-binding protein -
  ACNM7T_RS05265 (ACNM7T_05265) - 1016789..1018048 (+) 1260 WP_234631228.1 ABC transporter permease -
  ACNM7T_RS05270 (ACNM7T_05270) - 1018159..1019382 (+) 1224 WP_234631227.1 metallophosphoesterase family protein -
  ACNM7T_RS05275 (ACNM7T_05275) sbcE 1019379..1022261 (+) 2883 WP_234631226.1 ATP-binding protein Machinery gene
  ACNM7T_RS05280 (ACNM7T_05280) yhaM 1022335..1023279 (+) 945 WP_003155251.1 3'-5' exoribonuclease YhaM -
  ACNM7T_RS05285 (ACNM7T_05285) - 1023394..1023621 (+) 228 WP_012117207.1 sporulation YhaL family protein -
  ACNM7T_RS05290 (ACNM7T_05290) - 1023742..1024892 (+) 1151 WP_094031497.1 IS3 family transposase -
  ACNM7T_RS05295 (ACNM7T_05295) - 1024950..1025801 (-) 852 WP_015239508.1 peptidylprolyl isomerase -
  ACNM7T_RS05300 (ACNM7T_05300) yhzE1 1025960..1026046 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  ACNM7T_RS05305 (ACNM7T_05305) yhzE2 1026171..1026257 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  ACNM7T_RS05310 (ACNM7T_05310) - 1026314..1026532 (-) 219 WP_003155245.1 hypothetical protein -
  ACNM7T_RS05315 (ACNM7T_05315) - 1026593..1027123 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109566.63 Da        Isoelectric Point: 7.8128

>NTDB_id=981529 ACNM7T_RS05275 WP_234631226.1 1019379..1022261(+) (sbcE) [Bacillus amyloliquefaciens strain Scm]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKNGGVYGGTVELKHGDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDITEEIKTVKSAIEA
KPLADKKTALESELSSYPGALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAELRRQADLRAPNEDLLQKERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVSSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHAVTAENILDPAVRKEKEAALQSYKQTADTEGNEWQAHVQHLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFTGALLLYMLSGMQKPLPSERGGPGHKKKKPAISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRLY
EEWEAEMAPSEKQAELFMNELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VKERLHVLLAQAERAREEAKRKQALEMDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLTESRRETER
QLREIKTHLSGIGGKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREQTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYHKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRQRLQRLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=981529 ACNM7T_RS05275 WP_234631226.1 1019379..1022261(+) (sbcE) [Bacillus amyloliquefaciens strain Scm]
ATGAAAATAACGGCGATGCATATTTACCAATACGGAAAATTTTCCGACCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGGTTAAATGAAGCGGGCAAAACGACATTGATGTCCTTTATCAAAAGCGTGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGTACTGTGGAATTGAAGCATGGCGATCACGGCGCTGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTCTCCGATACAGACCGGGCGCTGTACGAAGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCGGAAGCGGCGGCAAAGCTTGACGGG
CGGCTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAACTGAAGAAATCAAAACAGTAAAATCGGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGGAGCATTGAAGCAATTCCCGAAGGA
CGGAATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGTCTTGAGGGGCTTCGGGCAAAAGCGG
CTGAACTCAGGCGGCAGGCTGATCTGCGCGCTCCAAATGAGGACTTGCTGCAAAAAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTATGAATCGCGCGGCGAACAGCTTGCAGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTCGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAGGACGGCATTCTTTCACTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCGTGACGGCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTTCAGCATCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCGATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGTGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAACCGCTGCCGTCAGAAAGAGGAGG
GCCCGGACACAAGAAAAAGAAGCCGGCGATCTCTAAAGAAGCGGCTGATCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCTATAT
GAAGAATGGGAGGCCGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAATGAACTGGGGTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTAATGAAAGATGTCAAAAAAGAAATCCTTAACAAGCATGAGCTGACCATTGAAG
CGGGCAGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAAAGAAAGACTGCACGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAT
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAACGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAACCGCGAACACTTTTGTGAACTCGCCAGGCTGACTGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTGGAGCCGTACATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCCCAGCTCCGTGAGCAAACCG
CTTTATTAACGGTGAAGCAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATTATCAGGGAAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGGCCGCTTACGGACGGACGCTATCACAAAT
TGTATTTTTCCGAGGCTGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCTGCTGGCGAACTGTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATTCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGTATCACTGCCGTTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGACAGCGGCTGCAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

56.95

100

0.572