Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NSS81_RS03920 Genome accession   NZ_CP151943
Coordinates   740875..742572 (-) Length   565 a.a.
NCBI ID   WP_342432246.1    Uniprot ID   -
Organism   Neobacillus sp. FSL H8-0543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 735875..747572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS81_RS03895 (NSS81_03895) - 736990..737229 (+) 240 WP_342432241.1 DUF2627 domain-containing protein -
  NSS81_RS03900 (NSS81_03900) - 737265..737990 (-) 726 WP_342432242.1 glycerophosphodiester phosphodiesterase -
  NSS81_RS03905 (NSS81_03905) - 738028..738165 (+) 138 WP_342432243.1 YycC family protein -
  NSS81_RS03910 (NSS81_03910) spo0A 738240..739031 (-) 792 WP_342432244.1 sporulation transcription factor Spo0A -
  NSS81_RS03915 (NSS81_03915) spoIVB 739387..740676 (-) 1290 WP_342432245.1 SpoIVB peptidase -
  NSS81_RS03920 (NSS81_03920) recN 740875..742572 (-) 1698 WP_342432246.1 DNA repair protein RecN Machinery gene
  NSS81_RS03925 (NSS81_03925) argR 742588..743037 (-) 450 WP_342432247.1 transcriptional regulator ArgR -
  NSS81_RS03930 (NSS81_03930) - 743189..744028 (-) 840 WP_342432248.1 TlyA family RNA methyltransferase -
  NSS81_RS03935 (NSS81_03935) dxs 744032..745927 (-) 1896 WP_342433926.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NSS81_RS03940 (NSS81_03940) - 746287..747180 (-) 894 WP_342432249.1 polyprenyl synthetase family protein -
  NSS81_RS03945 (NSS81_03945) - 747183..747416 (-) 234 WP_342432250.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 64021.06 Da        Isoelectric Point: 5.4426

>NTDB_id=981514 NSS81_RS03920 WP_342432246.1 740875..742572(-) (recN) [Neobacillus sp. FSL H8-0543]
MLSELSIKNFAIIEALTVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEAKAEIEGLFQLEYQHPVTAKA
LEFGIEIEEGMIVLRRDISRTGKSVCRINGKLVTISTLREIGATLVDIHGQHEHQDLMDETRHLPLLDQFGFEEIYPSIT
EYQDVFHRFEQVNKKLKSLSENEQKTAHRLDLIQFQFDEIQNANLKLNEDNELYEEKKKLANFERVFESLQTSYNALRGD
QKGLDWISMAMGHLEDAAALDTAYKESFQSVMNSFYQLEDVTSALRAELDGLEYDPHKLNEIEERLNEINQLKRKYGKTI
EEIVEYAAKIEEEIETLQNKETHIGQLEKELSSIKKDLILEAKQLTEIRKRWAERLTKLIHNELKELYMAKTVFEIRFES
ILPHFSRNGVDHVEFFISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIYK
VAVDSQVLCISHLPQVAAMADTHLYISKVTKDGRTKTAVSPLSSEEKIKEIGRMISGVEITDLTKKHAEELLFLAAENKK
VHTNV

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=981514 NSS81_RS03920 WP_342432246.1 740875..742572(-) (recN) [Neobacillus sp. FSL H8-0543]
TTGTTATCAGAATTATCGATAAAAAACTTTGCGATTATTGAAGCTCTCACCGTTTCTTTTGAGAAAGGATTGACAGTCTT
AACGGGTGAAACTGGTGCTGGAAAATCAATTATTATCGATGCCATTCATTTATTGGTTGGGGGTAGAGGATCTGCTGAAT
TTGTTCGTCATGGCGAGGCCAAAGCGGAAATTGAGGGATTATTTCAATTGGAGTATCAACACCCTGTAACTGCAAAAGCA
TTGGAATTTGGAATTGAGATTGAGGAAGGCATGATTGTCCTGCGCAGAGATATATCACGTACAGGAAAAAGTGTCTGCCG
AATCAATGGTAAGCTGGTTACAATTTCAACACTCAGAGAAATTGGTGCCACACTTGTAGATATTCATGGACAGCATGAAC
ATCAAGATTTAATGGATGAGACCAGACATCTACCACTGCTGGACCAATTTGGTTTTGAAGAAATTTATCCTTCAATCACT
GAATACCAGGATGTATTCCATCGCTTCGAGCAAGTAAATAAAAAGTTGAAGTCCTTAAGTGAAAATGAGCAAAAAACAGC
CCATCGTCTTGATTTAATTCAATTTCAGTTTGATGAAATTCAAAATGCGAATTTAAAGCTTAATGAAGACAATGAGCTTT
ATGAGGAGAAAAAGAAACTCGCTAATTTTGAAAGGGTATTTGAATCGCTTCAAACGAGCTACAATGCGTTAAGAGGAGAT
CAAAAGGGACTCGATTGGATTAGTATGGCAATGGGCCATCTTGAGGATGCAGCGGCACTAGATACGGCATATAAGGAATC
TTTTCAATCAGTGATGAACAGTTTTTATCAGCTAGAGGATGTGACTAGTGCTTTAAGAGCAGAATTGGATGGGTTGGAAT
ACGATCCCCATAAATTAAATGAAATTGAAGAGCGTTTAAATGAGATTAACCAATTAAAACGGAAATACGGTAAAACGATA
GAAGAAATAGTTGAATATGCGGCAAAAATTGAAGAAGAAATCGAAACACTGCAAAATAAAGAAACACATATTGGTCAATT
AGAGAAGGAACTATCCTCCATAAAGAAAGACCTAATATTAGAAGCCAAGCAATTAACGGAAATCCGTAAACGTTGGGCGG
AGAGGTTAACGAAATTAATACATAATGAATTAAAGGAATTATATATGGCGAAAACAGTATTTGAAATTCGTTTTGAATCA
ATTTTGCCTCATTTCTCGAGAAACGGTGTCGATCATGTTGAGTTTTTTATTTCCACTAATCCTGGTGAACCATTAAAGCC
TTTATCAAAAATAGCATCAGGCGGAGAGTTATCACGAATCATGTTGGCATTAAAAAGCATTTTTTCCAAACACCAAGGTG
TAACCTCGATCATATTTGATGAGGTTGATACTGGTGTTAGCGGAAGAGTGGCACAATCTATTGCCGAAAAAATATATAAA
GTAGCTGTTGATTCGCAGGTATTATGTATTTCTCATTTACCTCAGGTGGCTGCGATGGCAGACACCCATCTGTATATTTC
CAAGGTCACGAAAGACGGCAGAACAAAAACTGCAGTTAGTCCTCTAAGCTCAGAAGAAAAAATTAAAGAAATTGGCCGAA
TGATTTCTGGTGTTGAAATAACTGACCTTACCAAAAAACATGCGGAAGAATTACTATTCCTTGCAGCAGAAAATAAAAAA
GTGCATACAAACGTTTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.628

Multiple sequence alignment