Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   NSU09_RS21525 Genome accession   NZ_CP151942
Coordinates   4030659..4031804 (+) Length   381 a.a.
NCBI ID   WP_113712952.1    Uniprot ID   -
Organism   Bacillus sp. PS194     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4025659..4036804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU09_RS21500 (NSU09_21500) - 4025675..4026955 (+) 1281 WP_003242974.1 pitrilysin family protein -
  NSU09_RS21505 (NSU09_21505) albG 4026952..4027653 (+) 702 WP_003243391.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  NSU09_RS21510 (NSU09_21510) - 4027659..4029035 (-) 1377 WP_110109508.1 YncE family protein -
  NSU09_RS21515 (NSU09_21515) - 4029074..4030429 (-) 1356 WP_015250986.1 YncE family protein -
  NSU09_RS21520 (NSU09_21520) - 4030426..4030656 (-) 231 WP_024572000.1 hypothetical protein -
  NSU09_RS21525 (NSU09_21525) rapF 4030659..4031804 (+) 1146 WP_113712952.1 response regulator aspartate phosphatase RapF Regulator
  NSU09_RS21530 (NSU09_21530) phrF 4031788..4031907 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  NSU09_RS21535 (NSU09_21535) - 4032164..4032643 (+) 480 WP_015714892.1 hypothetical protein -
  NSU09_RS21540 (NSU09_21540) - 4032792..4033580 (+) 789 WP_015714893.1 membrane protein -
  NSU09_RS21545 (NSU09_21545) - 4033567..4034241 (+) 675 WP_015714894.1 hypothetical protein -
  NSU09_RS21550 (NSU09_21550) - 4034251..4035048 (+) 798 WP_231573542.1 hypothetical protein -
  NSU09_RS21555 (NSU09_21555) - 4035051..4035698 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  NSU09_RS21560 (NSU09_21560) - 4035691..4036251 (+) 561 WP_029726083.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45680.14 Da        Isoelectric Point: 4.9912

>NTDB_id=981507 NSU09_RS21525 WP_113712952.1 4030659..4031804(+) (rapF) [Bacillus sp. PS194]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAEDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=981507 NSU09_RS21525 WP_113712952.1 4030659..4031804(+) (rapF) [Bacillus sp. PS194]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGAAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(132-208)

Tetratricopeptide repeat (TPR_12)

(223-290)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572

Multiple sequence alignment