Detailed information NTG0981505

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACNM7T_RS01520
• Genome accession: NZ_CP183041
• Coordinates: 269839..270960 (+)
• Length: 373 a.a.
• NCBI ID: WP_007409040.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Scm
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 264839..275960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNM7T_RS01500 (ACNM7T_01500)	-	265148..266143 (-)	996	WP_094031472.1	DUF5105 domain-containing protein	-
ACNM7T_RS01505 (ACNM7T_01505)	-	266270..267670 (+)	1401	WP_094031473.1	YcdB/YcdC domain-containing protein	-
ACNM7T_RS01510 (ACNM7T_01510)	-	267871..269229 (+)	1359	WP_043021503.1	YcdB/YcdC domain-containing protein	-
ACNM7T_RS01515 (ACNM7T_01515)	-	269226..269729 (-)	504	WP_011996280.1	M15 family metallopeptidase	-
ACNM7T_RS01520 (ACNM7T_01520)	rapF	269839..270960 (+)	1122	WP_007409040.1	tetratricopeptide repeat protein	Regulator
ACNM7T_RS01525 (ACNM7T_01525)	-	271076..271855 (+)	780	WP_003156659.1	glucose 1-dehydrogenase	-
ACNM7T_RS01530 (ACNM7T_01530)	-	271938..273617 (+)	1680	WP_039062542.1	glycoside hydrolase family 13 protein	-
ACNM7T_RS01535 (ACNM7T_01535)	-	273802..274761 (+)	960	WP_015239100.1	metal ABC transporter substrate-binding protein	-
ACNM7T_RS01540 (ACNM7T_01540)	-	274816..275511 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.53 Da
• Isoelectric Point: 5.0806

>NTDB_id=981505 ACNM7T_RS01520 WP_007409040.1 269839..270960(+) (rapF) [Bacillus amyloliquefaciens strain Scm]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=981505 ACNM7T_RS01520 WP_007409040.1 269839..270960(+) (rapF) [Bacillus amyloliquefaciens strain Scm]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGTTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACACA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACAAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAGGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402