Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NSU09_RS20415 Genome accession   NZ_CP151942
Coordinates   3815797..3816519 (-) Length   240 a.a.
NCBI ID   WP_029725992.1    Uniprot ID   -
Organism   Bacillus sp. PS194     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3810797..3821519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU09_RS20380 (NSU09_20380) fliW 3810936..3811367 (-) 432 WP_029725990.1 flagellar assembly protein FliW -
  NSU09_RS20385 (NSU09_20385) - 3811388..3811963 (-) 576 WP_014481045.1 DUF6470 family protein -
  NSU09_RS20390 (NSU09_20390) flgL 3812010..3812906 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NSU09_RS20395 (NSU09_20395) flgK 3812917..3814440 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  NSU09_RS20400 (NSU09_20400) flgN 3814459..3814941 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NSU09_RS20405 (NSU09_20405) flgM 3814957..3815223 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  NSU09_RS20410 (NSU09_20410) - 3815304..3815723 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NSU09_RS20415 (NSU09_20415) comFC 3815797..3816519 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  NSU09_RS20420 (NSU09_20420) comFB 3816483..3816779 (-) 297 WP_015483764.1 late competence protein ComFB -
  NSU09_RS20425 (NSU09_20425) comFA 3816839..3818230 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  NSU09_RS20430 (NSU09_20430) - 3818336..3819181 (-) 846 WP_003227986.1 DegV family protein -
  NSU09_RS20435 (NSU09_20435) degU 3819279..3819968 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NSU09_RS20440 (NSU09_20440) degS 3820051..3821208 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27433.73 Da        Isoelectric Point: 9.4913

>NTDB_id=981500 NSU09_RS20415 WP_029725992.1 3815797..3816519(-) (comFC) [Bacillus sp. PS194]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=981500 NSU09_RS20415 WP_029725992.1 3815797..3816519(-) (comFC) [Bacillus sp. PS194]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGTTTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment