Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ACNR0F_RS02660 Genome accession   NZ_CP183037
Coordinates   492595..493971 (+) Length   458 a.a.
NCBI ID   WP_003789855.1    Uniprot ID   -
Organism   Kingella kingae strain URMC_2412A945     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 487595..498971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR0F_RS02635 (ACNR0F_02635) glnA 488460..489878 (+) 1419 WP_418605058.1 type I glutamate--ammonia ligase -
  ACNR0F_RS02640 (ACNR0F_02640) - 489995..490753 (+) 759 WP_038311005.1 ABC transporter ATP-binding protein -
  ACNR0F_RS02645 (ACNR0F_02645) proC 490789..491583 (-) 795 WP_038311003.1 pyrroline-5-carboxylate reductase -
  ACNR0F_RS02650 (ACNR0F_02650) - 492044..492292 (+) 249 WP_003789854.1 hypothetical protein -
  ACNR0F_RS02655 (ACNR0F_02655) - 492369..492512 (+) 144 WP_019389203.1 hypothetical protein -
  ACNR0F_RS02660 (ACNR0F_02660) radA/sms 492595..493971 (+) 1377 WP_003789855.1 DNA repair protein RadA Machinery gene
  ACNR0F_RS02665 (ACNR0F_02665) - 494235..494573 (+) 339 WP_003789856.1 hypothetical protein -
  ACNR0F_RS02670 (ACNR0F_02670) - 494875..497646 (-) 2772 WP_038310999.1 class I SAM-dependent DNA methyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49421.12 Da        Isoelectric Point: 7.6114

>NTDB_id=981457 ACNR0F_RS02660 WP_003789855.1 492595..493971(+) (radA/sms) [Kingella kingae strain URMC_2412A945]
MAKAPKIQFQCTECGGTTPKWVGKCPHCGEWNTLSEQLTAPEPKNARFQSWAAETTQVQELSKVTAMEVPREATGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIALMAKKRKVLYVSGEESAQQVALRSQRLGLNADGVNLLAEIRLEAIQAA
LKQHEPSVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRIAKQMGIAMIFVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTETGLKGVSNPSAIFLASYRDDVAGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHAGVACFDQDVFLNAVGGVKISEPAADLAVILAMLSSYRNKPLPEKMVAFGEIGLSGE
IRPVPRGQERLKEAEKLGFKRAIVPKANLPKNLKEFPSLKIQGVSSLQEAVNACRDWE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=981457 ACNR0F_RS02660 WP_003789855.1 492595..493971(+) (radA/sms) [Kingella kingae strain URMC_2412A945]
ATGGCAAAAGCCCCAAAAATCCAATTCCAATGCACCGAATGCGGTGGCACAACACCCAAATGGGTTGGCAAATGCCCGCA
TTGTGGCGAATGGAACACGCTTTCTGAACAGCTAACCGCACCCGAACCCAAAAACGCGCGTTTCCAATCGTGGGCGGCGG
AAACCACGCAAGTGCAAGAATTATCCAAAGTTACCGCCATGGAAGTCCCACGCGAAGCCACTGGCATGGGCGAACTTGAC
CGCGTGTTGGGCGGCGGTTTGGTGGACGGTGCGGTCATTTTGCTTGGTGGCGACCCAGGGATTGGCAAATCCACATTGTT
GTTGCAAACCATTGCTTTAATGGCGAAAAAACGCAAGGTGTTGTATGTGTCGGGCGAGGAATCGGCGCAACAAGTGGCGT
TGCGTTCGCAGCGTTTGGGGCTGAATGCGGATGGCGTGAATTTGTTGGCGGAAATCCGTTTGGAGGCGATTCAGGCTGCC
TTAAAACAGCACGAGCCGTCTGTGGTGGTGATTGACTCGATTCAAACGATGTATTCCGACCAAATCACGTCCGCGCCTGG
CTCGGTGTCGCAGGTGCGCGAATGTGCGGCGCAACTGACACGAATTGCGAAACAAATGGGCATTGCGATGATTTTTGTTG
GACACGTTACCAAAGACGGCGCGATTGCAGGTCCGCGCGTGTTGGAGCATATGGTGGACACGGTGCTGTATTTTGAGGGC
GACCAGCATTCCAATTACCGCATGATTCGGGCGATTAAAAACCGTTTTGGAGCGGCTAATGAATTGGGCGTGTTTGCGAT
GACGGAAACGGGCTTGAAAGGCGTTTCTAATCCGTCTGCGATTTTTTTGGCGAGCTATCGCGATGATGTGGCGGGTTCGT
GCGTGTTGGTTACGCAAGAGGGCAGTCGTCCGCTTTTGGTGGAAATTCAGGCGCTTGTTGATGATGCGCACGGTTTCACG
CCGAAGCGTTTAACGGTGGGTTTGGAGCAAAACCGTCTTGCCATGTTGCTGGCGGTGCTGAATCGCCACGCTGGCGTTGC
GTGTTTTGACCAAGATGTGTTTTTGAATGCGGTCGGCGGCGTGAAAATCAGCGAACCTGCGGCGGATTTGGCGGTAATTT
TGGCGATGTTGTCGAGCTATCGCAATAAGCCGCTGCCTGAAAAAATGGTGGCGTTTGGGGAAATTGGTTTGAGTGGCGAA
ATTCGTCCTGTGCCACGTGGGCAGGAGCGTTTGAAAGAAGCGGAGAAATTGGGCTTTAAACGGGCGATTGTGCCGAAAGC
GAATTTGCCGAAGAATTTAAAAGAGTTCCCAAGCCTGAAAATTCAAGGCGTAAGCAGCCTGCAAGAAGCGGTGAATGCTT
GTCGGGATTGGGAATAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(361-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(79-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

50.33

99.345

0.5
  radA Streptococcus mitis SK321

48.786

98.908

0.483
  radA Streptococcus pneumoniae Rx1

48.246

99.563

0.48
  radA Streptococcus pneumoniae D39

48.246

99.563

0.48
  radA Streptococcus pneumoniae R6

48.246

99.563

0.48
  radA Streptococcus pneumoniae TIGR4

48.246

99.563

0.48
  radA Streptococcus mitis NCTC 12261

48.115

98.472

0.474