Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NSU09_RS05635 Genome accession   NZ_CP151942
Coordinates   1088677..1089255 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus sp. PS194     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1083677..1094255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU09_RS05615 (NSU09_05615) hemAT 1084188..1085486 (-) 1299 WP_144527227.1 heme-based aerotactic transducer HemAT -
  NSU09_RS05620 (NSU09_05620) - 1085625..1087154 (-) 1530 WP_015252423.1 FAD-dependent oxidoreductase -
  NSU09_RS05625 (NSU09_05625) - 1087266..1088123 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  NSU09_RS05630 (NSU09_05630) - 1088151..1088384 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NSU09_RS05635 (NSU09_05635) comK 1088677..1089255 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  NSU09_RS05640 (NSU09_05640) - 1089302..1090201 (-) 900 WP_144527230.1 SDR family oxidoreductase -
  NSU09_RS05645 (NSU09_05645) - 1090418..1090687 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  NSU09_RS05650 (NSU09_05650) - 1090731..1092200 (-) 1470 WP_024571729.1 sodium:solute symporter -
  NSU09_RS05655 (NSU09_05655) - 1092197..1092397 (-) 201 WP_024571728.1 DUF3311 domain-containing protein -
  NSU09_RS05660 (NSU09_05660) - 1092605..1092967 (-) 363 WP_024571727.1 hypothetical protein -
  NSU09_RS05665 (NSU09_05665) - 1093119..1093742 (+) 624 WP_010886465.1 VTT domain-containing protein -
  NSU09_RS05670 (NSU09_05670) lepB 1093744..1094250 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=981451 NSU09_RS05635 WP_029317573.1 1088677..1089255(+) (comK) [Bacillus sp. PS194]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=981451 NSU09_RS05635 WP_029317573.1 1088677..1089255(+) (comK) [Bacillus sp. PS194]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCACTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment