Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ACNR0F_RS01460 Genome accession   NZ_CP183037
Coordinates   271597..272079 (+) Length   160 a.a.
NCBI ID   WP_032828136.1    Uniprot ID   -
Organism   Kingella kingae strain URMC_2412A945     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 266597..277079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR0F_RS01430 (ACNR0F_01430) mltB 268479..269492 (-) 1014 WP_043903281.1 lytic murein transglycosylase B -
  ACNR0F_RS01440 (ACNR0F_01440) - 269886..270262 (-) 377 Protein_279 hypothetical protein -
  ACNR0F_RS01445 (ACNR0F_01445) - 270259..270465 (-) 207 WP_003785517.1 hypothetical protein -
  ACNR0F_RS01450 (ACNR0F_01450) - 270571..271116 (+) 546 WP_003785518.1 RNA pyrophosphohydrolase -
  ACNR0F_RS01455 (ACNR0F_01455) rpsT 271177..271440 (-) 264 WP_003785519.1 30S ribosomal protein S20 -
  ACNR0F_RS01460 (ACNR0F_01460) comP 271597..272079 (+) 483 WP_032828136.1 type IV pilin protein Machinery gene
  ACNR0F_RS01465 (ACNR0F_01465) - 272144..273220 (-) 1077 WP_418604995.1 AI-2E family transporter -
  ACNR0F_RS01470 (ACNR0F_01470) dusA 273224..274297 (-) 1074 WP_038305076.1 tRNA dihydrouridine(20/20a) synthase DusA -
  ACNR0F_RS01475 (ACNR0F_01475) - 274320..274523 (-) 204 WP_003785524.1 cold-shock protein -
  ACNR0F_RS01480 (ACNR0F_01480) clpS 274708..275010 (+) 303 WP_003789543.1 ATP-dependent Clp protease adapter ClpS -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17920.48 Da        Isoelectric Point: 9.1760

>NTDB_id=981446 ACNR0F_RS01460 WP_032828136.1 271597..272079(+) (comP) [Kingella kingae strain URMC_2412A945]
MAKNRNVASYRSAGFTLMEVLVAVAIVGILVAFAYPMYQESVKKGRLSDAQKALLDNAQAWERHYASHGNFRKTSRLWID
LPIRETDFFCIRPQGAPRGATHDGQFAFKAVALNKQQEPRALILNQDLTMLLCESTTSACSETDFFANPSRADKNCRAYP

Nucleotide


Download         Length: 483 bp        

>NTDB_id=981446 ACNR0F_RS01460 WP_032828136.1 271597..272079(+) (comP) [Kingella kingae strain URMC_2412A945]
ATGGCTAAAAATAGAAATGTTGCGTCTTACCGTTCGGCTGGATTCACGTTAATGGAAGTGTTGGTGGCAGTGGCAATCGT
GGGGATTTTGGTGGCGTTTGCGTATCCGATGTATCAAGAATCGGTAAAAAAAGGGCGGTTGAGCGATGCACAAAAGGCCT
TGCTGGATAACGCACAGGCATGGGAGCGTCATTACGCATCGCATGGCAATTTCCGTAAAACATCGCGCTTGTGGATTGAT
TTGCCGATTCGGGAAACGGACTTTTTTTGTATTCGTCCGCAAGGTGCGCCACGTGGTGCAACACATGATGGGCAATTTGC
GTTTAAGGCGGTTGCGCTGAATAAACAGCAAGAACCACGCGCTTTGATTTTGAATCAGGATTTGACGATGTTGCTGTGCG
AAAGTACAACATCGGCATGCAGCGAAACCGATTTTTTTGCGAACCCTAGTCGTGCGGATAAAAATTGTCGAGCGTATCCG
TAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(36-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(11-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

39.726

91.25

0.362

Multiple sequence alignment