Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAFX31_RS23715 Genome accession   NZ_CP151941
Coordinates   3342585..3344093 (-) Length   502 a.a.
NCBI ID   WP_061034076.1    Uniprot ID   A0A7Y4CPH7
Organism   Vibrio chagasii strain TBV018     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 3337585..3349093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS23695 (AAFX31_23695) - 3337913..3339031 (-) 1119 WP_061034079.1 glycosyltransferase -
  AAFX31_RS23700 (AAFX31_23700) - 3339024..3339809 (-) 786 WP_411061982.1 acyltransferase -
  AAFX31_RS23705 (AAFX31_23705) - 3339903..3341276 (-) 1374 WP_116870550.1 O-antigen ligase family protein -
  AAFX31_RS23710 (AAFX31_23710) - 3341474..3342604 (-) 1131 WP_411061983.1 glycosyltransferase family 4 protein -
  AAFX31_RS23715 (AAFX31_23715) luxO 3342585..3344093 (-) 1509 WP_061034076.1 sigma-54-dependent transcriptional regulator Regulator
  AAFX31_RS23720 (AAFX31_23720) - 3344299..3344703 (-) 405 WP_061034075.1 Hpt domain-containing protein -
  AAFX31_RS23725 (AAFX31_23725) - 3345075..3346307 (-) 1233 WP_411061984.1 quaternary amine ABC transporter ATP-binding protein -
  AAFX31_RS23730 (AAFX31_23730) - 3346300..3347199 (-) 900 WP_008217852.1 ABC transporter permease -
  AAFX31_RS23735 (AAFX31_23735) - 3347355..3348347 (-) 993 WP_061034074.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 56083.07 Da        Isoelectric Point: 5.4031

>NTDB_id=981432 AAFX31_RS23715 WP_061034076.1 3342585..3344093(-) (luxO) [Vibrio chagasii strain TBV018]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKTFIERHVPQLVILDLKLPDMPGEEVLDWISDNDIPTAVIIA
TAHGSVNIAVDLIQRGAEDFLEKPIQADRLKTSVNLHLRRAKLENLVDNIQSKFDRDRFHNFIGSCLPMQAVYKIIDSVA
PTTASVFINGESGTGKEVCAEAIHQESQRGDKPFVAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGNREIKVDVRIICATNRDPLVEVEEGRFREDLYYRVHVVPIEMPPLRERGSDI
VTLANHFLKLYAKQDKKKFNSIDKETQGLLKRYPWPGNVRQLQNIIRNIVVLNNETSVTKEMLPAPINKADATTSKSVTP
IRSAVVEAVSPVVQEGKLPPVTPEELERSSVSPDTNDPMTPAFTTSDGAIRPMWQIEREAIQHAINHCDGNVLNAAVLLE
LSPSTVYRKKQAWESEDECNQA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=981432 AAFX31_RS23715 WP_061034076.1 3342585..3344093(-) (luxO) [Vibrio chagasii strain TBV018]
ATGCGCCCTAAGGTATTGTTAGTTGAAGACTCCACCTCCCTCGCCGTACTTTACAAGCAGTACGTAAAAGACGAGCCATA
CGACATATTTCATGTCGAAACTGGAGCTGAAGCTAAAACATTTATAGAGAGACACGTCCCACAACTGGTTATCCTCGATC
TTAAACTGCCTGATATGCCAGGTGAAGAGGTATTAGATTGGATCAGTGATAACGACATCCCAACCGCTGTAATCATCGCG
ACAGCCCATGGTTCAGTGAACATTGCCGTTGACCTAATTCAGCGCGGTGCGGAAGACTTCTTGGAAAAGCCAATTCAAGC
CGACCGCCTCAAAACATCGGTTAACCTGCATCTGCGCAGAGCCAAACTCGAAAATCTAGTCGACAATATTCAAAGCAAAT
TCGATCGTGACCGTTTCCATAACTTCATCGGTTCTTGTTTACCGATGCAAGCCGTCTATAAAATCATCGACTCAGTTGCT
CCGACAACCGCAAGTGTGTTCATCAATGGCGAGAGCGGGACAGGTAAAGAAGTATGCGCAGAGGCAATTCACCAAGAGAG
TCAGCGTGGTGATAAACCATTCGTTGCCATCAACTGTGGTGCTATCCCCCGCGACTTAATGGAAAGCGAAATCTTCGGTC
ATGTCAAAGGCGCATTTACCGGTGCTACAACCGATCGTAAAGGTGCTGCAATGCAAGCACACGGTGGCACACTGTTTCTG
GATGAACTTTGTGAAATGGAATTGGAAATGCAGAAAAAGCTCCTTCGATTCCTACAAACCGGGACTTTTACCCCGTTAGG
TGGCAACCGAGAAATCAAAGTAGATGTCAGAATCATCTGTGCGACTAACCGTGACCCTCTCGTCGAAGTAGAAGAAGGTC
GATTCCGTGAAGACCTTTACTATCGTGTACATGTGGTGCCTATTGAGATGCCACCGCTGAGAGAAAGAGGAAGTGACATT
GTCACTCTAGCTAACCACTTTTTGAAACTTTACGCCAAACAAGACAAGAAGAAATTCAATTCTATCGATAAAGAGACACA
AGGTTTACTTAAGCGCTATCCATGGCCGGGCAATGTTCGTCAGCTACAAAACATCATTCGCAACATCGTAGTGTTAAACA
ATGAAACCAGTGTAACCAAAGAGATGTTACCTGCTCCGATCAACAAAGCAGACGCTACAACCTCAAAAAGCGTTACGCCA
ATACGTAGCGCTGTTGTGGAAGCCGTGTCGCCAGTTGTTCAAGAAGGTAAGCTGCCTCCAGTCACACCAGAAGAGCTTGA
GCGTTCATCTGTCTCTCCAGACACAAATGATCCAATGACACCGGCATTTACCACTAGTGACGGTGCGATACGTCCAATGT
GGCAGATAGAACGCGAAGCCATTCAACATGCGATCAATCATTGTGATGGAAATGTGTTAAACGCTGCCGTTTTATTGGAG
CTGAGCCCTTCCACTGTTTACCGTAAGAAACAGGCTTGGGAGTCTGAAGATGAGTGTAACCAAGCCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(453-489)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y4CPH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.795

97.211

0.484

Multiple sequence alignment