Detailed information NTG0981431

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: AAFX31_RS22680
• Genome accession: NZ_CP151941
• Coordinates: 3149500..3150924 (-)
• Length: 474 a.a.
• NCBI ID: WP_411061916.1
• Uniprot ID: -
• Organism: Vibrio chagasii strain TBV018
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3144500..3155924

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFX31_RS22655 (AAFX31_22655)	-	3145171..3145824 (+)	654	WP_239939658.1	thiopurine S-methyltransferase	-
AAFX31_RS22660 (AAFX31_22660)	purT	3145917..3147092 (-)	1176	WP_239936800.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
AAFX31_RS22665 (AAFX31_22665)	cdd	3147260..3148147 (-)	888	WP_061031509.1	cytidine deaminase	-
AAFX31_RS22670 (AAFX31_22670)	-	3148424..3149101 (-)	678	WP_008217479.1	LrgB family protein	-
AAFX31_RS22675 (AAFX31_22675)	-	3149104..3149475 (-)	372	WP_008217481.1	CidA/LrgA family protein	-
AAFX31_RS22680 (AAFX31_22680)	sbcB	3149500..3150924 (-)	1425	WP_411061916.1	exodeoxyribonuclease I	Machinery gene
AAFX31_RS22685 (AAFX31_22685)	-	3151890..3152324 (+)	435	WP_008217484.1	DUF4402 domain-containing protein	-
AAFX31_RS22690 (AAFX31_22690)	-	3152377..3152826 (+)	450	WP_061031507.1	DUF4402 domain-containing protein	-
AAFX31_RS22695 (AAFX31_22695)	-	3152823..3153533 (+)	711	WP_411061917.1	molecular chaperone	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54823.19 Da
• Isoelectric Point: 4.8645

>NTDB_id=981431 AAFX31_RS22680 WP_411061916.1 3149500..3150924(-) (sbcB) [Vibrio chagasii strain TBV018]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNIIGEPLVIYCQPPADYLPAPEAALITRITPQKAMSQGLPEP
VFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPDGIVWPENEEGFP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKTAQPKMFDYLYNMRHKRKLNELVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELETDELRERLYTKRSDLNEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLAILREHPEIREKLIGLYSQEREYEKSDDVDTQLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDESEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=981431 AAFX31_RS22680 WP_411061916.1 3149500..3150924(-) (sbcB) [Vibrio chagasii strain TBV018]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCAGCAAAAGATCGTCCAAG
TCAGTTTGCCGGCGTTCGTACCGACCAAGATTTCAATATTATTGGTGAGCCATTGGTCATCTACTGCCAACCTCCTGCTG
ATTATCTACCTGCACCTGAAGCCGCACTGATCACTCGCATCACTCCACAAAAAGCCATGTCTCAAGGCCTACCGGAACCT
GTGTTCATCGCCAAGATACATGCTGAGCTTGCAAAACCGAACACCACAAGCCTCGGTTACAACAGTATTCGATTCGATGA
CGAAGTAACGCGATACACCTGTTACCGTAACTTCATTGACCCATATGCGTGGAGTTGGCAGAACGGCAACTCACGTTGGG
ATCTATTAGACGTGATGCGTGCAGTACACGCTCTGCGCCCTGACGGTATAGTGTGGCCAGAAAACGAAGAAGGTTTCCCA
AGCTTCAAACTGGAACATCTATCTGTGGCAAACGGCATAGAACACGAAAACGCGCATGATGCGATGGCGGATGTTATCGC
GACTATCGAACTAGCGAAAAAGCTGAAAACCGCACAACCTAAGATGTTTGATTATCTCTACAACATGCGTCACAAGCGCA
AGTTGAACGAATTAGTCGACATCGTAAACATGACACCTCTCATGCATGTGTCAGGCATGTTTGGTCGTGACTGCAATTAC
ACAAGCTGGATTGTTCCTATGGCGTGGCATCCAACCAATCAAAACGCGGTTATCGTGGTGGACTTGGCAAAAGATCCTAG
CCCTCTGCTTGAGCTAGAGACTGATGAGCTTAGAGAAAGGCTTTACACCAAACGCAGCGACCTGAATGAAGACGAGCTAC
CAGTGCCAATTAAGCTGGTTCAACTCAACAAGTGCCCTATTCTAGCGCCGGCAAAAACATTAACTGCTGAAAATGCCGAA
ACCATTGGTATCGACCGCCAGCAGTGTTTGAAGAACCTAGCGATCCTACGCGAACACCCAGAAATTCGTGAAAAATTGAT
TGGCTTATATTCACAGGAACGTGAGTATGAAAAGAGCGACGATGTAGATACCCAACTTTACGATGGCTTCTTCTCTCCAG
CAGATAAGACCGCGATGAACATCATCCGCGAGACTGATCCAAATAACTTAGCAGCGTTGGATATCACCTTCAGTGACGAA
CGTATTAAGCCTTTGCTGTTCCGTTACCGCGCTCGCCACTTCCCATGGACGCTAGACGAATCTGAACAACTTAAGTGGGC
AAACCATTGTCGTGAGTTTTACGAAAGCCGCTTAGAAGAATACATGCTCAACCTAGAAAACCTCGCACATGAACATGAAA
GCGACGAAAAGAAAATGGCTATCTTGAAAGCGGTGTATCAATACGTAGAAAAGCTAGCTAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	76.744	99.789	0.766