Detailed information NTG0981405

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACNSOA_RS16510
• Genome accession: NZ_CP182912
• Coordinates: 3397336..3398328 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain FAHZZU6014
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3392336..3403328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACNSOA_RS16490 (ACNSOA_16460)	otnK	3393111..3394373 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
ACNSOA_RS16495 (ACNSOA_16465)	ygbL	3394370..3395008 (+)	639	WP_001278994.1	aldolase	-
ACNSOA_RS16500 (ACNSOA_16470)	ygbM	3395013..3395789 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACNSOA_RS16505 (ACNSOA_16475)	ygbN	3395878..3397242 (+)	1365	WP_281237607.1	GntP family transporter	-
ACNSOA_RS16510 (ACNSOA_16480)	rpoS	3397336..3398328 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACNSOA_RS16515 (ACNSOA_16485)	nlpD	3398391..3399485 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACNSOA_RS16520 (ACNSOA_16490)	pcm	3399670..3400296 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACNSOA_RS16525 (ACNSOA_16495)	surE	3400290..3401051 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
ACNSOA_RS16530 (ACNSOA_16500)	truD	3401032..3402081 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACNSOA_RS16535 (ACNSOA_16505)	ispF	3402078..3402557 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACNSOA_RS16540 (ACNSOA_16510)	ispD	3402557..3403267 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=981405 ACNSOA_RS16510 WP_000081550.1 3397336..3398328(-) (rpoS) [Escherichia coli strain FAHZZU6014]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=981405 ACNSOA_RS16510 WP_000081550.1 3397336..3398328(-) (rpoS) [Escherichia coli strain FAHZZU6014]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715