Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AAFX31_RS10645 Genome accession   NZ_CP151941
Coordinates   566826..568214 (-) Length   462 a.a.
NCBI ID   WP_032553998.1    Uniprot ID   -
Organism   Vibrio chagasii strain TBV018     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 561826..573214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS10610 (AAFX31_10620) moaE 562383..562838 (-) 456 WP_105057417.1 molybdopterin synthase catalytic subunit MoaE -
  AAFX31_RS10615 (AAFX31_10625) moaD 562841..563086 (-) 246 WP_004737346.1 molybdopterin synthase sulfur carrier subunit -
  AAFX31_RS10620 (AAFX31_10630) moaC 563083..563562 (-) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  AAFX31_RS10625 (AAFX31_10635) moaB 563575..564087 (-) 513 WP_004737344.1 molybdenum cofactor biosynthesis protein B -
  AAFX31_RS10630 (AAFX31_10640) moaA 564167..565156 (-) 990 WP_004737343.1 GTP 3',8-cyclase MoaA -
  AAFX31_RS10635 (AAFX31_10645) - 565492..566379 (+) 888 WP_239930992.1 YvcK family protein -
  AAFX31_RS10640 (AAFX31_10650) luxU 566458..566802 (-) 345 WP_004737341.1 quorum-sensing phosphorelay protein LuxU -
  AAFX31_RS10645 (AAFX31_10655) luxO 566826..568214 (-) 1389 WP_032553998.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AAFX31_RS10650 (AAFX31_10660) uvrB 568504..570534 (-) 2031 WP_239938166.1 excinuclease ABC subunit UvrB -
  AAFX31_RS10660 (AAFX31_10670) - 571305..572498 (-) 1194 WP_411061630.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51705.26 Da        Isoelectric Point: 6.4047

>NTDB_id=981395 AAFX31_RS10645 WP_032553998.1 566826..568214(-) (luxO) [Vibrio chagasii strain TBV018]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQSEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQAWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=981395 AAFX31_RS10645 WP_032553998.1 566826..568214(-) (luxO) [Vibrio chagasii strain TBV018]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTAGAGGATACCGCCTCGGTAGCAGCTTTGTACCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTGGGCACTGGTCGCGATGCAATTGAGAGCTTGAATCATCGAA
TCCCTGACCTAATTTTATTAGATCTACGCCTGCCTGATATGACGGGCATGGACGTACTATTTGCTGTCAAACAAAAATAC
CCTGAAGTCCCAGTCATCTTCATGACGGCCCACGGTTCGATCGATACTGCTGTTGAAGCGATGCGTCATGGCTCTCAAGA
CTTCCTTATCAAACCTTGTGAAGCAGACCGCCTTCGTATCACGGTCAATAATGCTATCCGCAAAGCGACTAAGTTAAAAA
ACAGCTCTGAGCATCCCGGTAATCAGAACTATCAAGGTTTCATTGGTAGTAGCCAAACTATGCAGCAGGTGTATCGAACT
ATAGATTCTGCGGCATCGAGTAAAGCGAGTATTTTTATTACGGGTGAAAGTGGTACCGGTAAAGAAGTATGTGCTGAAGC
GATTCATGCGGCGAGTAAACGTGGTGATAAGCCATTTATTGCTATCAACTGTGCGGCGATTCCTAAGGACTTGATTGAAA
GTGAGTTGTTTGGTCACGTTAAAGGGGCGTTTACGGGCGCGGCAACAGACCGTCAAGGCGCGGCTGAGCTAGCTGATGGA
GGCACCTTGTTCCTTGATGAGCTGTGTGAGATGGACCTTGAACTGCAAACCAAGCTTCTGCGTTTTATTCAGACTGGTAC
CTTCCAAAAAGTAGGTTCGTCGAAGATGAAGAGTGTCGACGTTCGTTTTGTTTGTGCGACCAACCGCGATCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTTAGAGAAGATTTATACTATCGTTTGTACGTGATTCCTCTGCACTTGCCACCATTGCGTGAG
CGTGGTGAAGATGTCATCGAGATTGCGTACTCACTGCTAGGATATATGTCCGTGGAAGAGGGCAAAGCGTTTGTGCGTTT
TGCTCAGGAAGTGCTTGATCGTTTCAATCAGTATGAATGGCCTGGTAATGTACGTCAGCTGCAAAATGTGCTGCGAAATG
TTGTGGTATTGAACAATGGTAAAGAGATTACGCTCAACATGTTGCCGCCACCACTAAACCAGCCAATTGAAAACAGTCTA
CGCTTGAAAGAGAAGCAGAGTGAAGACATCACGGTGAAAGATATTTTCCCACTGTGGATCACTGAAAAAACAGCTATCGA
GCAGGCGATTAAAGCGTGTGATGGTAACATTCCGCGAGCGGCTGGTTTCTTGGATGTGAGTCCGTCGACTATCTACCGTA
AGTTGCAAGCGTGGAATGCAAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.161

96.97

0.836

Multiple sequence alignment