Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AAFX31_RS08395 Genome accession   NZ_CP151940
Coordinates   1976506..1977600 (+) Length   364 a.a.
NCBI ID   WP_061031248.1    Uniprot ID   -
Organism   Vibrio chagasii strain TBV018     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971506..1982600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX31_RS08365 (AAFX31_08380) - 1973290..1973526 (-) 237 WP_061031252.1 hypothetical protein -
  AAFX31_RS08370 (AAFX31_08385) - 1973692..1974318 (-) 627 WP_061031251.1 D-Ala-D-Ala carboxypeptidase family metallohydrolase -
  AAFX31_RS08375 (AAFX31_08390) - 1974459..1974773 (-) 315 WP_004742367.1 DUF496 family protein -
  AAFX31_RS08380 (AAFX31_08395) - 1974969..1975169 (+) 201 WP_008217256.1 hypothetical protein -
  AAFX31_RS08385 (AAFX31_08400) - 1975226..1975882 (+) 657 WP_061031250.1 YceH family protein -
  AAFX31_RS08390 (AAFX31_08405) - 1975883..1976197 (+) 315 WP_411060469.1 GIY-YIG nuclease family protein -
  AAFX31_RS08395 (AAFX31_08410) luxP 1976506..1977600 (+) 1095 WP_061031248.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AAFX31_RS08400 (AAFX31_08415) luxQ 1977600..1980170 (+) 2571 WP_239940176.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41029.22 Da        Isoelectric Point: 5.4695

>NTDB_id=981391 AAFX31_RS08395 WP_061031248.1 1976506..1977600(+) (luxP) [Vibrio chagasii strain TBV018]
MKRLLMLFGLAVFSASALSHGTHVLNGYWEYQEYLSNFPEQKTLTDKMVEAVKKHPVPLAKAQDEPITISVVYPGQQISD
YWVRNIQAFEKRLDKLRINYQINQVFTRVNADLTQQSISLQEAIENKTDYLIFTLDTTRHRKFIEHVLTSTETKLILQNI
TTPVRAWADRQPFMYVGFDHATGSLKLADYFKTASKPGSKYSVLYRSEGYISDARGDTFIHDVNSDTNFALKSSFYTKSD
KESGYQAAKISIENDKDLDFIYACATDVALGAADAIRESGRDILVNGWGGGSAELEAIARGDLDVTVMRMNDDTGIAMAE
AIKWDLAGQQVPTVYSGDFEVVTKEDSPERISELKQRAFRYSGQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=981391 AAFX31_RS08395 WP_061031248.1 1976506..1977600(+) (luxP) [Vibrio chagasii strain TBV018]
ATGAAACGTTTACTGATGTTGTTTGGACTTGCCGTATTTTCTGCGTCCGCTCTCTCCCATGGTACTCATGTCCTTAATGG
ATATTGGGAGTACCAAGAATATCTTTCTAACTTCCCAGAACAAAAAACCTTAACCGATAAGATGGTCGAGGCCGTAAAAA
AACACCCAGTCCCGCTCGCAAAAGCGCAAGACGAGCCCATCACTATTTCCGTCGTTTATCCTGGGCAACAGATCTCTGAT
TACTGGGTTCGTAATATTCAAGCCTTTGAGAAGCGACTCGACAAGTTGAGAATAAACTACCAGATTAACCAAGTGTTTAC
GCGAGTGAATGCGGATCTCACTCAGCAGAGCATCTCGTTGCAAGAAGCCATTGAAAACAAGACGGATTACTTAATCTTCA
CACTGGATACCACGCGTCACCGCAAGTTTATCGAACATGTATTGACCTCAACAGAGACTAAGTTGATTCTACAGAACATT
ACGACACCTGTTCGTGCATGGGCTGACAGACAACCGTTTATGTATGTGGGTTTTGACCATGCTACCGGCAGTTTGAAGTT
AGCGGATTACTTTAAAACTGCGAGCAAGCCAGGAAGCAAATACTCGGTTCTATACCGCTCAGAAGGCTATATCAGCGATG
CGCGAGGTGATACGTTTATCCATGATGTGAATAGCGATACAAACTTTGCGTTAAAGTCGTCGTTTTACACCAAATCAGAT
AAAGAGAGCGGTTATCAAGCTGCTAAAATCAGCATTGAGAACGATAAAGACCTAGACTTTATTTATGCCTGTGCAACTGA
TGTCGCTCTCGGCGCTGCAGATGCCATTCGTGAGTCTGGTCGAGATATCCTAGTGAATGGTTGGGGCGGCGGATCTGCTG
AGCTTGAAGCCATTGCTAGAGGTGACCTTGATGTGACGGTTATGCGTATGAACGATGACACAGGTATTGCAATGGCAGAG
GCGATTAAGTGGGACCTTGCAGGGCAACAAGTTCCTACAGTTTACTCAGGTGATTTTGAAGTGGTGACCAAGGAAGACTC
ACCAGAACGTATTTCTGAACTCAAACAGCGAGCATTTAGATACTCAGGTCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

65.027

100

0.654

Multiple sequence alignment