Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AAFX12_RS18940 Genome accession   NZ_CP151939
Coordinates   850987..852084 (-) Length   365 a.a.
NCBI ID   WP_005385634.1    Uniprot ID   A0AAW9BFR8
Organism   Vibrio alginolyticus strain TBV025     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 845987..857084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX12_RS18925 (AAFX12_18950) - 846566..847624 (-) 1059 WP_005373588.1 HlyD family secretion protein -
  AAFX12_RS18930 (AAFX12_18955) slyA 847660..848115 (-) 456 WP_017635177.1 transcriptional regulator SlyA -
  AAFX12_RS18935 (AAFX12_18960) luxQ 848411..850987 (-) 2577 WP_064369363.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  AAFX12_RS18940 (AAFX12_18965) luxP 850987..852084 (-) 1098 WP_005385634.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AAFX12_RS18945 (AAFX12_18970) - 852416..852733 (-) 318 WP_053349265.1 GIY-YIG nuclease family protein -
  AAFX12_RS18950 (AAFX12_18975) - 852730..853380 (-) 651 WP_054577764.1 YceH family protein -
  AAFX12_RS18955 (AAFX12_18980) - 853546..853770 (-) 225 WP_005385630.1 hypothetical protein -
  AAFX12_RS18960 (AAFX12_18985) - 853991..854305 (+) 315 WP_005373603.1 DUF496 family protein -
  AAFX12_RS18965 (AAFX12_18990) - 854427..855770 (+) 1344 WP_025767935.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41587.05 Da        Isoelectric Point: 5.9503

>NTDB_id=981385 AAFX12_RS18940 WP_005385634.1 850987..852084(-) (luxP) [Vibrio alginolyticus strain TBV025]
MKKALVFSLISMAAFAPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=981385 AAFX12_RS18940 WP_005385634.1 850987..852084(-) (luxP) [Vibrio alginolyticus strain TBV025]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTGCGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAGTTTTTAGACCAGTTTCCACAACAGAAGCAGTTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGATGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTACTTCTCAGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAATCAATTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCTGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGACTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGATGATGTCATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment