Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AAFX12_RS13690 Genome accession   NZ_CP151938
Coordinates   2971617..2972645 (+) Length   342 a.a.
NCBI ID   WP_254901949.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain TBV025     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2966617..2977645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX12_RS13670 (AAFX12_13690) rplC 2967179..2967808 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  AAFX12_RS13675 (AAFX12_13695) rpsJ 2967823..2968134 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  AAFX12_RS13680 (AAFX12_13700) rpmE 2968591..2968812 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  AAFX12_RS13685 (AAFX12_13705) priA 2969109..2971313 (+) 2205 WP_064368950.1 primosomal protein N' -
  AAFX12_RS13690 (AAFX12_13710) cytR 2971617..2972645 (+) 1029 WP_254901949.1 DNA-binding transcriptional regulator CytR Regulator
  AAFX12_RS13695 (AAFX12_13715) ftsN 2972871..2973419 (+) 549 WP_017820300.1 cell division protein FtsN -
  AAFX12_RS13700 (AAFX12_13720) hslV 2973535..2974086 (+) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  AAFX12_RS13705 (AAFX12_13725) hslU 2974110..2975441 (+) 1332 WP_025768349.1 HslU--HslV peptidase ATPase subunit -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37765.46 Da        Isoelectric Point: 6.4948

>NTDB_id=981373 AAFX12_RS13690 WP_254901949.1 2971617..2972645(+) (cytR) [Vibrio alginolyticus strain TBV025]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=981373 AAFX12_RS13690 WP_254901949.1 2971617..2972645(+) (cytR) [Vibrio alginolyticus strain TBV025]
ATAAATGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCCTTAATGAATCCAGAGAAAGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGTATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACA
GAAGAAACGCGAAAGCTCTTTCGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTAC
CATTCGATGTCAGTAAGCCAGAGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTT
CCGACAGTACATATTGATAACCTGACCTCTGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGC
TCAAATCTCTGGACCAGATACAGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAACCACCAACGGCTATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCAAAAAAGCTTGG
CTTACGAGTACCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CCATCTCTCAACCTCGCTATGAGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCAT
TCAGGCTCGCGTCTGCTTGAAACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.935

99.123

0.971
  cytR Vibrio cholerae C6706

89.521

97.661

0.874

Multiple sequence alignment