Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAFX12_RS02625 Genome accession   NZ_CP151938
Coordinates   539894..540412 (+) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus strain TBV025     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 534894..545412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX12_RS02615 (AAFX12_02615) gshA 537612..539180 (+) 1569 WP_064368762.1 glutamate--cysteine ligase -
  AAFX12_RS02620 (AAFX12_02620) - 539204..539809 (+) 606 WP_171343190.1 hypothetical protein -
  AAFX12_RS02625 (AAFX12_02625) luxS 539894..540412 (+) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  AAFX12_RS02630 (AAFX12_02630) - 540481..541761 (-) 1281 WP_005379948.1 HlyC/CorC family transporter -
  AAFX12_RS02635 (AAFX12_02635) - 541886..542680 (-) 795 WP_005379950.1 inner membrane protein YpjD -
  AAFX12_RS02640 (AAFX12_02640) ffh 542905..544287 (+) 1383 WP_005385423.1 signal recognition particle protein -
  AAFX12_RS02645 (AAFX12_02645) rpsP 544497..544745 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  AAFX12_RS02650 (AAFX12_02650) rimM 544775..545323 (+) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=981354 AAFX12_RS02625 WP_017820391.1 539894..540412(+) (luxS) [Vibrio alginolyticus strain TBV025]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=981354 AAFX12_RS02625 WP_017820391.1 539894..540412(+) (luxS) [Vibrio alginolyticus strain TBV025]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGATGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment