Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AAFX34_RS16880 Genome accession   NZ_CP151937
Coordinates   2027465..2028886 (+) Length   473 a.a.
NCBI ID   WP_411132346.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2022465..2033886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS16860 (AAFX34_17420) - 2022963..2023730 (-) 768 WP_411132343.1 adenosylcobinamide-GDP ribazoletransferase -
  AAFX34_RS16865 (AAFX34_17425) cobT 2023732..2024760 (-) 1029 WP_332200803.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AAFX34_RS16870 (AAFX34_17430) - 2024950..2026188 (-) 1239 WP_411132344.1 M12 family metallo-peptidase -
  AAFX34_RS16875 (AAFX34_17435) - 2026693..2027391 (+) 699 WP_411132345.1 oxidoreductase -
  AAFX34_RS16880 (AAFX34_17440) sbcB 2027465..2028886 (+) 1422 WP_411132346.1 exodeoxyribonuclease I Machinery gene
  AAFX34_RS16885 (AAFX34_17445) - 2028932..2029303 (+) 372 WP_045588948.1 CidA/LrgA family protein -
  AAFX34_RS16890 (AAFX34_17450) - 2029306..2029983 (+) 678 WP_038963115.1 LrgB family protein -
  AAFX34_RS16895 (AAFX34_17455) - 2030296..2030688 (+) 393 WP_017790523.1 SulA-like leucine-rich domain-containing protein -
  AAFX34_RS16900 (AAFX34_17460) - 2030891..2031994 (+) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  AAFX34_RS16905 (AAFX34_17465) - 2032068..2032472 (-) 405 WP_238827329.1 transporter -
  AAFX34_RS16910 (AAFX34_17470) - 2032711..2033478 (-) 768 Protein_1784 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54777.00 Da        Isoelectric Point: 5.1722

>NTDB_id=981328 AAFX34_RS16880 WP_411132346.1 2027465..2028886(+) (sbcB) [Vibrio vulnificus strain TBV029]
MQQDNQPSFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFFDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVRAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=981328 AAFX34_RS16880 WP_411132346.1 2027465..2028886(+) (sbcB) [Vibrio vulnificus strain TBV029]
ATGCAGCAAGACAATCAGCCCTCTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTCGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCTTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGTTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAGAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGTTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATAGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAATTGGTGCATTTGAATAAGTGCCCGATTTTAGCGCCAGCCAAAACCCTCACAGCGGAGAACGCCGCCACT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCATCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAACCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.297

99.789

0.801

Multiple sequence alignment