Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAFX34_RS10910 Genome accession   NZ_CP151937
Coordinates   707774..708292 (+) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain TBV029     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 702774..713292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS10900 (AAFX34_10890) gshA 705515..707080 (+) 1566 WP_061058913.1 glutamate--cysteine ligase -
  AAFX34_RS10905 (AAFX34_10895) - 707118..707723 (+) 606 WP_223370886.1 hypothetical protein -
  AAFX34_RS10910 (AAFX34_10900) luxS 707774..708292 (+) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  AAFX34_RS10915 (AAFX34_10905) - 708382..709659 (-) 1278 WP_011079538.1 HlyC/CorC family transporter -
  AAFX34_RS10920 (AAFX34_10910) - 709746..710540 (-) 795 WP_011079539.1 inner membrane protein YpjD -
  AAFX34_RS10925 (AAFX34_10915) ffh 710754..712130 (+) 1377 WP_011079540.1 signal recognition particle protein -
  AAFX34_RS10930 (AAFX34_10920) rpsP 712412..712660 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  AAFX34_RS10935 (AAFX34_10925) rimM 712676..713224 (+) 549 WP_061058912.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=981319 AAFX34_RS10910 WP_011079537.1 707774..708292(+) (luxS) [Vibrio vulnificus strain TBV029]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=981319 AAFX34_RS10910 WP_011079537.1 707774..708292(+) (luxS) [Vibrio vulnificus strain TBV029]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCAGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment