Detailed information NTG0981316

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AAFX34_RS10790
• Genome accession: NZ_CP151937
• Coordinates: 685425..686417 (+)
• Length: 330 a.a.
• NCBI ID: WP_011079521.1
• Uniprot ID: A0A3Q0L3U7
• Organism: Vibrio vulnificus strain TBV029
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 680425..691417

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFX34_RS10755 (AAFX34_10745)	ftsB	680456..680737 (+)	282	WP_011079514.1	cell division protein FtsB	-
AAFX34_RS10760 (AAFX34_10750)	ispD	680737..681450 (+)	714	WP_045618620.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AAFX34_RS10765 (AAFX34_10755)	ispF	681447..681923 (+)	477	WP_061058919.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AAFX34_RS10770 (AAFX34_10760)	truD	681959..683002 (+)	1044	WP_011079517.1	tRNA pseudouridine(13) synthase TruD	-
AAFX34_RS10775 (AAFX34_10765)	surE	683008..683775 (+)	768	WP_011079518.1	5'/3'-nucleotidase SurE	-
AAFX34_RS10780 (AAFX34_10770)	-	683778..684404 (+)	627	WP_411132497.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AAFX34_RS10785 (AAFX34_10775)	-	684448..685344 (+)	897	WP_039554645.1	peptidoglycan DD-metalloendopeptidase family protein	-
AAFX34_RS10790 (AAFX34_10780)	rpoS	685425..686417 (+)	993	WP_011079521.1	RNA polymerase sigma factor RpoS	Regulator
AAFX34_RS10795 (AAFX34_10785)	mutS	686493..689054 (-)	2562	WP_108676939.1	DNA mismatch repair protein MutS	-
AAFX34_RS10800 (AAFX34_10790)	pncC	689138..689641 (+)	504	WP_060530760.1	nicotinamide-nucleotide amidase	-
AAFX34_RS10805 (AAFX34_10795)	recA	689776..690825 (+)	1050	WP_011079524.1	recombinase RecA	Machinery gene
AAFX34_RS10810 (AAFX34_10800)	recX	690929..691390 (+)	462	WP_061058917.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38054.13 Da
• Isoelectric Point: 4.5114

>NTDB_id=981316 AAFX34_RS10790 WP_011079521.1 685425..686417(+) (rpoS) [Vibrio vulnificus strain TBV029]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVKLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=981316 AAFX34_RS10790 WP_011079521.1 685425..686417(+) (rpoS) [Vibrio vulnificus strain TBV029]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCAAACTTCGCGAGGAGTTTGATGCCAGCAACAAGAGCTTAGACG
CGACGCAGCTCTATCTAGGAGAAATTGGCTTTTCTCCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCGCGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTGGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGTGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCGACTTACGCAACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAGCTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGATATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGCTCTGTCGATACGCCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCAGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGCTATGAGCCTTCAACACTGGAAGAAGTTGGGCAAGAGATTGGTT
TAACTCGTGAGCGAGTGCGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATCGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

3D structure

• AlphaFold DB: A0A3Q0L3U7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.899	100	0.836