Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACNFKH_RS05695 Genome accession   NZ_CP182513
Coordinates   1094707..1095573 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AS-83-79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1089707..1100573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKH_RS05675 metF 1091560..1092408 (+) 849 WP_002859283.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  ACNFKH_RS05680 - 1092430..1092621 (-) 192 WP_002852856.1 membrane protein -
  ACNFKH_RS05685 atpB 1092618..1093298 (-) 681 WP_002852750.1 F0F1 ATP synthase subunit A -
  ACNFKH_RS05690 radA/sms 1093367..1094707 (-) 1341 WP_002868570.1 DNA repair protein RadA Machinery gene
  ACNFKH_RS05695 pilA 1094707..1095573 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  ACNFKH_RS05700 - 1095573..1096130 (-) 558 WP_002882214.1 TlpA family protein disulfide reductase -
  ACNFKH_RS05705 - 1096213..1096839 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  ACNFKH_RS05710 rny 1096760..1098313 (+) 1554 WP_002853829.1 ribonuclease Y -
  ACNFKH_RS05715 - 1098322..1098879 (+) 558 WP_002882212.1 DedA family protein -
  ACNFKH_RS05720 - 1098879..1100138 (+) 1260 WP_002882211.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=981192 ACNFKH_RS05695 WP_002852840.1 1094707..1095573(-) (pilA) [Campylobacter jejuni strain AS-83-79]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=981192 ACNFKH_RS05695 WP_002852840.1 1094707..1095573(-) (pilA) [Campylobacter jejuni strain AS-83-79]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACTATCTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATTACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTACTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434