Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNFKH_RS05050 Genome accession   NZ_CP182513
Coordinates   968182..968736 (+) Length   184 a.a.
NCBI ID   WP_002882609.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AS-83-79     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 963182..973736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKH_RS05015 - 963375..963795 (+) 421 Protein_965 GNAT family N-acetyltransferase -
  ACNFKH_RS05020 - 963860..964480 (+) 621 WP_002882617.1 NAD(P)H-dependent oxidoreductase -
  ACNFKH_RS05025 - 964480..965085 (+) 606 WP_002882616.1 NAD(P)H-dependent oxidoreductase -
  ACNFKH_RS05030 pgsA 965211..965747 (+) 537 WP_002882615.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACNFKH_RS05035 rseP 965744..966850 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  ACNFKH_RS05040 - 966843..967709 (+) 867 WP_265604721.1 VirK family antimicrobial peptide resistance protein -
  ACNFKH_RS05045 rpsF 967796..968173 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  ACNFKH_RS05050 ssb 968182..968736 (+) 555 WP_002882609.1 single-stranded DNA-binding protein Machinery gene
  ACNFKH_RS05055 rpsR 968747..969007 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  ACNFKH_RS05060 lon 969068..971443 (-) 2376 WP_002866098.1 endopeptidase La -
  ACNFKH_RS05065 bamD 971460..972107 (-) 648 WP_002882608.1 outer membrane protein assembly factor BamD -
  ACNFKH_RS05070 fliW 972268..972657 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACNFKH_RS05075 proC 972657..973388 (+) 732 WP_002882606.1 pyrroline-5-carboxylate reductase Machinery gene
  ACNFKH_RS05080 ctsT 973385..973687 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20824.71 Da        Isoelectric Point: 5.0431

>NTDB_id=981183 ACNFKH_RS05050 WP_002882609.1 968182..968736(+) (ssb) [Campylobacter jejuni strain AS-83-79]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWNDQNGQNRSKHSIQVENMEMLGGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQN
PQHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=981183 ACNFKH_RS05050 WP_002882609.1 968182..968736(+) (ssb) [Campylobacter jejuni strain AS-83-79]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAATGATCAAAATGGACAAAATCGCTCTAAGCATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCGGCAA
TTCCAATGCTCCACAACAAGGTGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATC
AAAGCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAAC
CCACAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.83

100

0.397

Multiple sequence alignment