Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACNFKH_RS02955 Genome accession   NZ_CP182513
Coordinates   557632..558015 (+) Length   127 a.a.
NCBI ID   WP_002854812.1    Uniprot ID   -
Organism   Campylobacter jejuni strain AS-83-79     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 552632..563015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNFKH_RS02935 - 552711..554645 (-) 1935 WP_002882550.1 RNB domain-containing ribonuclease -
  ACNFKH_RS02940 ilvC 554764..555786 (+) 1023 WP_002855220.1 ketol-acid reductoisomerase -
  ACNFKH_RS02945 - 555790..556872 (+) 1083 WP_002882551.1 divergent polysaccharide deacetylase family protein -
  ACNFKH_RS02950 dprA 556862..557635 (+) 774 WP_002882553.1 DNA-processing protein DprA Machinery gene
  ACNFKH_RS02955 dprB 557632..558015 (+) 384 WP_002854812.1 Holliday junction resolvase RuvX Machinery gene
  ACNFKH_RS02960 - 558044..558883 (+) 840 WP_079263865.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACNFKH_RS02965 msrA 559059..559556 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACNFKH_RS02970 ppa 559597..560115 (-) 519 WP_002882557.1 inorganic diphosphatase -
  ACNFKH_RS02975 adk 560125..560703 (-) 579 WP_002872374.1 adenylate kinase -
  ACNFKH_RS02980 aspS 560700..562451 (-) 1752 WP_002882559.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14159.67 Da        Isoelectric Point: 8.4950

>NTDB_id=981176 ACNFKH_RS02955 WP_002854812.1 557632..558015(+) (dprB) [Campylobacter jejuni strain AS-83-79]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIADTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=981176 ACNFKH_RS02955 WP_002854812.1 557632..558015(+) (dprB) [Campylobacter jejuni strain AS-83-79]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGTTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCGATACGCGCAA
AAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.094

100

0.441