Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WFZ83_RS17565 Genome accession   NZ_CP151867
Coordinates   3355700..3356023 (+) Length   107 a.a.
NCBI ID   WP_000578878.1    Uniprot ID   A0A6L7H7A6
Organism   Bacillus thuringiensis strain YB6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3350700..3361023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFZ83_RS17550 - 3351216..3352583 (-) 1368 WP_000116799.1 aldehyde dehydrogenase -
  WFZ83_RS17555 inhA1 3352755..3355142 (-) 2388 WP_001035926.1 M6 family metalloprotease immune inhibitor InhA1 -
  WFZ83_RS17560 - 3355486..3355620 (+) 135 WP_000276214.1 anti-repressor SinI family protein -
  WFZ83_RS17565 sinR 3355700..3356023 (+) 324 WP_000578878.1 helix-turn-helix domain-containing protein Regulator
  WFZ83_RS17570 calY 3356099..3356692 (-) 594 WP_000053708.1 biofilm matrix protein CalY -
  WFZ83_RS17575 - 3357079..3357921 (-) 843 WP_342377625.1 DUF4047 domain-containing protein -
  WFZ83_RS17580 - 3358056..3358643 (-) 588 WP_000172852.1 CalY family protein -
  WFZ83_RS17585 - 3358704..3359273 (-) 570 WP_342377630.1 signal peptidase I -
  WFZ83_RS17590 - 3359468..3360754 (-) 1287 WP_342377631.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12319.17 Da        Isoelectric Point: 9.6244

>NTDB_id=981147 WFZ83_RS17565 WP_000578878.1 3355700..3356023(+) (sinR) [Bacillus thuringiensis strain YB6]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=981147 WFZ83_RS17565 WP_000578878.1 3355700..3356023(+) (sinR) [Bacillus thuringiensis strain YB6]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGACTCCGAATGGACACAGCTCGTC
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterProScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment