Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WFZ83_RS14310 Genome accession   NZ_CP151867
Coordinates   2722510..2722797 (-) Length   95 a.a.
NCBI ID   WP_342377022.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain YB6     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2717510..2727797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFZ83_RS14280 - 2717824..2718171 (+) 348 WP_000426313.1 DUF4257 domain-containing protein -
  WFZ83_RS14285 - 2718256..2718480 (+) 225 WP_000162601.1 hypothetical protein -
  WFZ83_RS14290 - 2718669..2719844 (-) 1176 WP_342377014.1 MFS transporter -
  WFZ83_RS14295 - 2719893..2720828 (-) 936 WP_249711424.1 aldo/keto reductase -
  WFZ83_RS14300 - 2720936..2721244 (+) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  WFZ83_RS14305 - 2721285..2722235 (-) 951 WP_001089035.1 serine protease -
  WFZ83_RS14310 abrB 2722510..2722797 (-) 288 WP_342377022.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  WFZ83_RS14315 - 2722914..2724794 (-) 1881 WP_342377024.1 ABC transporter permease -
  WFZ83_RS14320 - 2725091..2726095 (+) 1005 WP_266132168.1 hypothetical protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10673.41 Da        Isoelectric Point: 6.3180

>NTDB_id=981144 WFZ83_RS14310 WP_342377022.1 2722510..2722797(-) (abrB) [Bacillus thuringiensis strain YB6]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIERFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=981144 WFZ83_RS14310 WP_342377022.1 2722510..2722797(-) (abrB) [Bacillus thuringiensis strain YB6]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAGGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment