Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   WFZ83_RS04395 Genome accession   NZ_CP151867
Coordinates   793084..793518 (+) Length   144 a.a.
NCBI ID   WP_000811492.1    Uniprot ID   A0A0G8EA73
Organism   Bacillus thuringiensis strain YB6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 788084..798518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFZ83_RS04375 - 788973..790136 (-) 1164 WP_000434592.1 aminotransferase A -
  WFZ83_RS04380 - 790259..790459 (-) 201 WP_000929284.1 hypothetical protein -
  WFZ83_RS04385 kinB 790770..792044 (+) 1275 WP_000420390.1 sporulation sensor histidine kinase KinB -
  WFZ83_RS04390 - 792098..792847 (-) 750 WP_000388464.1 DUF3967 domain-containing protein -
  WFZ83_RS04395 nucA/comI 793084..793518 (+) 435 WP_000811492.1 DNA-entry nuclease Machinery gene
  WFZ83_RS04400 comJ 793555..793944 (+) 390 WP_000424033.1 competence protein ComJ -
  WFZ83_RS04405 metE 793981..796269 (-) 2289 WP_087932319.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  WFZ83_RS04410 - 797197..797754 (-) 558 WP_000062080.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16012.35 Da        Isoelectric Point: 8.4331

>NTDB_id=981137 WFZ83_RS04395 WP_000811492.1 793084..793518(+) (nucA/comI) [Bacillus thuringiensis strain YB6]
MKQLKGIIISIIAILSILVAVYEVLVPEETSTKKTNAYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFDVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=981137 WFZ83_RS04395 WP_000811492.1 793084..793518(+) (nucA/comI) [Bacillus thuringiensis strain YB6]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATTGCAATTCTTTCTATTTTAGTAGCGGTTTATGAAGTACTTGTTCC
AGAGGAAACAAGTACAAAAAAAACAAATGCGTATGATCAAGTTCTAGAATTTCCGAAAGAGAGATATCCAGAAACAGGGA
AACATATTACGGATGCGATAAAGGAAGGACATTCAGAAGTTTGTACAATCGACCGTGGTGGCGCTGCGGATAGAAGAAAG
TTATCGTTAGCTCCATACCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGCGGAAA
AGGAGCACATATCGAATATATAAGTCCAGCAGATAACCGCGGAGCAGGGTCTTGGGTAGGAAATAAGTTAGATAAATACC
CAGATGGTACGCGTGTGAAATTTGACGTAAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8EA73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

70.796

78.472

0.556

Multiple sequence alignment