Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WFZ83_RS02850 Genome accession   NZ_CP151867
Coordinates   526291..527037 (+) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus thuringiensis strain YB6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 521291..532037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFZ83_RS02820 - 521580..523724 (+) 2145 WP_000946454.1 HD family phosphohydrolase -
  WFZ83_RS02825 ybeY 523721..524191 (+) 471 WP_000054692.1 rRNA maturation RNase YbeY -
  WFZ83_RS02830 - 524188..524541 (+) 354 WP_000715480.1 diacylglycerol kinase family protein -
  WFZ83_RS02835 - 524641..525039 (+) 399 WP_001086294.1 cytidine deaminase -
  WFZ83_RS02840 era 525032..525937 (+) 906 WP_001080241.1 GTPase Era -
  WFZ83_RS02845 - 526114..526257 (+) 144 WP_000883924.1 YqzL family protein -
  WFZ83_RS02850 recO 526291..527037 (+) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  WFZ83_RS02855 - 527145..527777 (+) 633 WP_000583759.1 helix-turn-helix transcriptional regulator -
  WFZ83_RS02860 - 527807..528619 (+) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  WFZ83_RS02865 dnaG 529473..531269 (+) 1797 WP_152154989.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=981134 WFZ83_RS02850 WP_000487010.1 526291..527037(+) (recO) [Bacillus thuringiensis strain YB6]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=981134 WFZ83_RS02850 WP_000487010.1 526291..527037(+) (recO) [Bacillus thuringiensis strain YB6]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTTTCAAG
AGAATTGGGTAAGGTAAGTGCGATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAATTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGACACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTTAGAGAGGGCGGTTTTCTGTGCTCACGTCATGCTGAGCAAGATCAGTACCGTATACCAGTGGG
GGAAGCTGTTCATAAATTATTGCGTCTTTTCTACCACTTCGATTTACATAGGCTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment