Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   AAGA51_RS17445 Genome accession   NZ_CP151843
Coordinates   477728..478816 (+) Length   362 a.a.
NCBI ID   WP_042487211.1    Uniprot ID   -
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 472728..483816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS17410 - 472916..473332 (-) 417 WP_042487228.1 VOC family protein -
  AAGA51_RS17415 - 473621..474151 (+) 531 WP_042487225.1 hypothetical protein -
  AAGA51_RS17420 - 474433..474750 (-) 318 WP_042487222.1 DUF496 family protein -
  AAGA51_RS17425 - 474939..475136 (+) 198 WP_042487425.1 hypothetical protein -
  AAGA51_RS17430 - 475183..475833 (+) 651 WP_042487220.1 YceH family protein -
  AAGA51_RS17435 - 475833..476132 (+) 300 WP_042487216.1 GIY-YIG nuclease family protein -
  AAGA51_RS17440 - 476280..477431 (+) 1152 WP_042487213.1 conjugal transfer protein TraF -
  AAGA51_RS17445 luxP 477728..478816 (+) 1089 WP_042487211.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  AAGA51_RS17450 luxQ 478831..481383 (+) 2553 WP_042487208.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  AAGA51_RS17455 - 481417..482085 (-) 669 WP_042487206.1 PilZ domain-containing protein -
  AAGA51_RS17460 - 482223..482747 (-) 525 WP_042487203.1 hypothetical protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 41237.79 Da        Isoelectric Point: 5.1665

>NTDB_id=981106 AAGA51_RS17445 WP_042487211.1 477728..478816(+) (luxP) [Vibrio diazotrophicus strain ATCC 33466]
MKRALLFSLFFSATPALSAQFLDGYWHYKEFLSINPTEKERTLLLSETVRNKPVPISVTQDKPVTISVVYPGQQISDYWV
RNIKAFEKRMEELGIKYQLNQVFTRPNVDMRQQSLSLMEAIKNNTGYLIFTLDTTRHRKFIEHVLNSSDTKLILQNITTP
VQGWEERQPMMYVGFDHELGANQIADYYKQAIPDGSKYSVLYFSEGYISDARGSSFIQMMEESNSYKLSSSFYTKTTEQS
GYESTLKIIEKDPDIKFIYACSTDVALGAAKALKELNRQDVEINGWGGGSAELDAIVQGDLDVTVMRMNDDTGIAMAEAI
KWDIENKPVPLVYSGDLAVVTKNDSKETIEKLKQRAFRYSDN

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=981106 AAGA51_RS17445 WP_042487211.1 477728..478816(+) (luxP) [Vibrio diazotrophicus strain ATCC 33466]
ATGAAAAGAGCCTTATTGTTTTCACTTTTTTTTAGTGCCACACCTGCATTGTCGGCTCAATTTCTAGATGGTTATTGGCA
CTACAAAGAGTTTTTAAGTATCAACCCAACGGAGAAAGAGCGGACGCTTTTGCTTTCGGAAACCGTGCGTAACAAACCTG
TCCCAATCTCTGTCACTCAAGACAAACCTGTCACTATCTCTGTTGTTTATCCCGGCCAACAAATTTCTGATTATTGGGTT
CGCAATATCAAGGCATTCGAGAAACGAATGGAAGAGTTGGGGATTAAATATCAGTTAAACCAAGTGTTTACTAGACCAAA
CGTGGATATGAGACAACAAAGTTTGTCTCTGATGGAAGCGATAAAAAATAACACTGGCTATTTAATTTTTACTCTAGACA
CAACACGCCATAGGAAATTTATCGAACACGTGTTGAATTCGTCAGACACCAAACTCATTCTGCAAAATATCACGACACCA
GTGCAAGGCTGGGAAGAGAGACAACCCATGATGTATGTGGGTTTCGATCATGAGCTCGGTGCAAATCAAATTGCTGATTA
TTACAAGCAAGCTATTCCAGATGGCAGTAAGTATTCGGTGCTGTATTTTTCTGAAGGTTATATCAGTGATGCTCGTGGTA
GTAGCTTCATTCAAATGATGGAAGAGAGTAATAGCTACAAGCTTTCTTCGTCTTTTTATACCAAAACTACCGAGCAGAGT
GGTTATGAGTCGACGTTAAAGATCATTGAAAAAGATCCTGATATTAAATTCATCTATGCCTGTTCAACCGACGTTGCATT
AGGTGCAGCAAAAGCGCTAAAGGAATTGAATCGTCAGGACGTTGAAATCAATGGATGGGGAGGCGGTTCTGCTGAGCTAG
ACGCTATCGTGCAAGGTGATTTGGATGTTACTGTGATGCGAATGAATGATGATACCGGTATTGCAATGGCGGAAGCCATT
AAATGGGACATCGAAAATAAACCCGTACCGCTTGTCTATTCAGGCGATTTAGCCGTTGTAACTAAAAATGACTCTAAAGA
AACGATAGAGAAACTCAAACAACGCGCTTTCCGATATTCAGATAATTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(66-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

68.033

100

0.688

Multiple sequence alignment