Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AAGA51_RS12755 Genome accession   NZ_CP151842
Coordinates   2778486..2779004 (-) Length   172 a.a.
NCBI ID   WP_042480533.1    Uniprot ID   -
Organism   Vibrio diazotrophicus strain ATCC 33466     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2773486..2784004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGA51_RS12730 rimM 2773527..2774081 (-) 555 WP_042480520.1 ribosome maturation factor RimM -
  AAGA51_RS12735 rpsP 2774109..2774357 (-) 249 WP_042480523.1 30S ribosomal protein S16 -
  AAGA51_RS12740 ffh 2774610..2775998 (-) 1389 WP_042480526.1 signal recognition particle protein -
  AAGA51_RS12745 - 2776245..2777039 (+) 795 WP_042480529.1 inner membrane protein YpjD -
  AAGA51_RS12750 - 2777141..2778415 (+) 1275 WP_042480532.1 HlyC/CorC family transporter -
  AAGA51_RS12755 luxS 2778486..2779004 (-) 519 WP_042480533.1 S-ribosylhomocysteine lyase Regulator
  AAGA51_RS12760 gshA 2779118..2780683 (-) 1566 WP_042480535.1 glutamate--cysteine ligase -
  AAGA51_RS12765 - 2780809..2783664 (-) 2856 WP_042480538.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19060.99 Da        Isoelectric Point: 5.0360

>NTDB_id=981094 AAGA51_RS12755 WP_042480533.1 2778486..2779004(-) (luxS) [Vibrio diazotrophicus strain ATCC 33466]
MPLLDSFTVDHTRMNAPAVRVAKKMQTPKGDTITVFDLRFTMPNKAILSEKGIHTLEHLYAGFMRAHLNGSNVEIIDISP
MGCRTGFYMSLIGTPTEQEVADAWLAAMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKEIAKTVIAAGISVNRNDELA
LPEDMLKELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=981094 AAGA51_RS12755 WP_042480533.1 2778486..2779004(-) (luxS) [Vibrio diazotrophicus strain ATCC 33466]
ATGCCATTATTAGACAGCTTTACGGTTGACCATACTCGAATGAATGCACCTGCGGTGCGCGTAGCTAAGAAAATGCAAAC
CCCTAAAGGCGATACCATTACTGTTTTTGACTTGCGCTTTACTATGCCAAACAAAGCGATTTTGTCTGAAAAAGGTATTC
ATACCCTTGAACATCTATATGCAGGTTTTATGCGTGCACACCTAAACGGTTCAAATGTAGAGATTATTGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCCTGATTGGTACACCAACTGAGCAAGAAGTGGCTGATGCTTGGCTTGCAGC
AATGCAAGATGTGCTGAAAGTGGAATCTCAAAATAAGATCCCTGAACTTAATGAATACCAATGCGGTACAGCAGCAATGC
ACTCGCTAGAAGAAGCGAAGGAAATTGCTAAGACTGTTATCGCTGCGGGTATCAGTGTTAACCGTAACGATGAGTTAGCT
TTGCCAGAAGATATGCTGAAAGAGCTGAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.228

99.419

0.907

Multiple sequence alignment